Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FMG_0880 | FMG_1240 | FMG_0880 | FMG_1240 | Bifunctional aldolase-pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Chorismate synthase. | 0.400 |
FMG_0880 | FMG_1243 | FMG_0880 | FMG_1243 | Bifunctional aldolase-pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Carboxysome formation protein. | 0.646 |
FMG_1234 | FMG_1235 | FMG_1234 | FMG_1235 | Hypothetical protein. | Putative oxygen-independent coproporphyrinogen III oxidase. | 0.773 |
FMG_1234 | FMG_1236 | FMG_1234 | FMG_1236 | Hypothetical protein. | Ribonucleoside-diphosphate reductase beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | 0.610 |
FMG_1234 | FMG_1239 | FMG_1234 | FMG_1239 | Hypothetical protein. | Chorismate mutase. | 0.610 |
FMG_1234 | FMG_1240 | FMG_1234 | FMG_1240 | Hypothetical protein. | Chorismate synthase. | 0.610 |
FMG_1234 | FMG_1242 | FMG_1234 | FMG_1242 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.610 |
FMG_1234 | FMG_1243 | FMG_1234 | FMG_1243 | Hypothetical protein. | Carboxysome formation protein. | 0.610 |
FMG_1234 | aroA | FMG_1234 | FMG_1241 | Hypothetical protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.610 |
FMG_1234 | aroK | FMG_1234 | FMG_1238 | Hypothetical protein. | Shikimate 5-dehydrogenase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate dehydrogenase family. | 0.610 |
FMG_1234 | aroQ | FMG_1234 | FMG_1237 | Hypothetical protein. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.610 |
FMG_1235 | FMG_1234 | FMG_1235 | FMG_1234 | Putative oxygen-independent coproporphyrinogen III oxidase. | Hypothetical protein. | 0.773 |
FMG_1235 | FMG_1236 | FMG_1235 | FMG_1236 | Putative oxygen-independent coproporphyrinogen III oxidase. | Ribonucleoside-diphosphate reductase beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | 0.617 |
FMG_1235 | FMG_1239 | FMG_1235 | FMG_1239 | Putative oxygen-independent coproporphyrinogen III oxidase. | Chorismate mutase. | 0.611 |
FMG_1235 | FMG_1240 | FMG_1235 | FMG_1240 | Putative oxygen-independent coproporphyrinogen III oxidase. | Chorismate synthase. | 0.624 |
FMG_1235 | FMG_1242 | FMG_1235 | FMG_1242 | Putative oxygen-independent coproporphyrinogen III oxidase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.610 |
FMG_1235 | FMG_1243 | FMG_1235 | FMG_1243 | Putative oxygen-independent coproporphyrinogen III oxidase. | Carboxysome formation protein. | 0.611 |
FMG_1235 | aroA | FMG_1235 | FMG_1241 | Putative oxygen-independent coproporphyrinogen III oxidase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.610 |
FMG_1235 | aroK | FMG_1235 | FMG_1238 | Putative oxygen-independent coproporphyrinogen III oxidase. | Shikimate 5-dehydrogenase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate dehydrogenase family. | 0.643 |
FMG_1235 | aroQ | FMG_1235 | FMG_1237 | Putative oxygen-independent coproporphyrinogen III oxidase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.610 |
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