Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
FMG_1262Putative hydrogenase. (167 aa)    
Predicted Functional Partners:
FMG_1155
NADP-reducing hydrogenase.
 
 0.998
FMG_1156
NADP-reducing hydrogenase.
 
 0.969
FMG_1152
NAD-dependent formate dehydrogenase alpha subunit.
  
 
 0.933
FMG_0385
Pyruvate/ferredoxin oxidoreductase.
   
 
 0.929
FMG_1154
Formate dehydrogenase alpha subunit.
   
 0.920
FMG_1595
Rubrerythrin.
    
 0.863
FMG_1367
Putative NADH-ubiquinone oxidoreductase.
  
 
 0.823
FMG_1263
Multidrug ABC transporter.
       0.658
FMG_0063
Thiamine biosynthesis protein.
 
   
 0.589
FMG_1261
Putative membrane protein.
       0.515
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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