Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FMG_1303ABC transporter permease protein. (746 aa)    
Predicted Functional Partners:
FMG_1304
ABC transporter ATP-binding protein.
 
   0.957
FMG_0049
Putative N-acetylmuramoyl-L-alanine amidase.
  
     0.606
FMG_1342
ABC transporter ATP-binding protein.
 
   0.529
FMG_1393
Putative macrolide-efflux protein.
  
     0.493
FMG_1579
Conserved hypothetical protein; Multi domain.
  
     0.475
FMG_1305
Hypothetical protein.
       0.458
FMG_1306
Hypothetical protein.
       0.453
FMG_0914
Multidrug ABC transporter ATP-binding protein.
  
   0.444
FMG_0946
ABC transporter ATP-binding protein.
  
   0.444
FMG_1394
Putative transcriptional regulator ArsR family.
  
    0.439
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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