FMG_1307 protein (Finegoldia magna ATCC 29328)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FMG_1307

Antibiotic ABC transporter ATP-binding protein. (246 aa)

Predicted Functional Partners:

FMG_1308

0.942

FMG_1353

0.915

ecfA-2

0.906

FMG_0252

0.878

FMG_1062

0.835

FMG_1342

0.820

FMG_1444

0.743

FMG_1304

0.738

FMG_0946

0.680

FMG_1306

0.554

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FMG_0252	FMG_1307	FMG_0252	FMG_1307	Sugar ABC transportor ATP-binding protein; Belongs to the ABC transporter superfamily.	Antibiotic ABC transporter ATP-binding protein.	0.878
FMG_0252	FMG_1444	FMG_0252	FMG_1444	Sugar ABC transportor ATP-binding protein; Belongs to the ABC transporter superfamily.	Cobalt ABC transporter ATP-binding protein.	0.540
FMG_0252	ecfA-2	FMG_0252	FMG_1116	Sugar ABC transportor ATP-binding protein; Belongs to the ABC transporter superfamily.	Cobalt ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.540
FMG_0946	FMG_1307	FMG_0946	FMG_1307	ABC transporter ATP-binding protein.	Antibiotic ABC transporter ATP-binding protein.	0.680
FMG_1062	FMG_1307	FMG_1062	FMG_1307	ABC transporter ATP-binding protein.	Antibiotic ABC transporter ATP-binding protein.	0.835
FMG_1304	FMG_1306	FMG_1304	FMG_1306	ABC transporter ATP-binding protein.	Hypothetical protein.	0.453
FMG_1304	FMG_1307	FMG_1304	FMG_1307	ABC transporter ATP-binding protein.	Antibiotic ABC transporter ATP-binding protein.	0.738
FMG_1306	FMG_1304	FMG_1306	FMG_1304	Hypothetical protein.	ABC transporter ATP-binding protein.	0.453
FMG_1306	FMG_1307	FMG_1306	FMG_1307	Hypothetical protein.	Antibiotic ABC transporter ATP-binding protein.	0.554
FMG_1306	FMG_1308	FMG_1306	FMG_1308	Hypothetical protein.	Antibiotic ABC transporter permease protein.	0.554
FMG_1307	FMG_0252	FMG_1307	FMG_0252	Antibiotic ABC transporter ATP-binding protein.	Sugar ABC transportor ATP-binding protein; Belongs to the ABC transporter superfamily.	0.878
FMG_1307	FMG_0946	FMG_1307	FMG_0946	Antibiotic ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.680
FMG_1307	FMG_1062	FMG_1307	FMG_1062	Antibiotic ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.835
FMG_1307	FMG_1304	FMG_1307	FMG_1304	Antibiotic ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.738
FMG_1307	FMG_1306	FMG_1307	FMG_1306	Antibiotic ABC transporter ATP-binding protein.	Hypothetical protein.	0.554
FMG_1307	FMG_1308	FMG_1307	FMG_1308	Antibiotic ABC transporter ATP-binding protein.	Antibiotic ABC transporter permease protein.	0.942
FMG_1307	FMG_1342	FMG_1307	FMG_1342	Antibiotic ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.820
FMG_1307	FMG_1353	FMG_1307	FMG_1353	Antibiotic ABC transporter ATP-binding protein.	ABC transporter ATP-binding protein.	0.915
FMG_1307	FMG_1444	FMG_1307	FMG_1444	Antibiotic ABC transporter ATP-binding protein.	Cobalt ABC transporter ATP-binding protein.	0.743
FMG_1307	ecfA-2	FMG_1307	FMG_1116	Antibiotic ABC transporter ATP-binding protein.	Cobalt ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.906