FMG_1448 protein (Finegoldia magna ATCC 29328)

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Score

FMG_1448

Transcription accessory protein; S1 RNA binding domain. (697 aa)

Predicted Functional Partners:

rpoA

0.826

rpoB

0.820

rpoZ

0.788

FMG_1447

0.646

greA

0.643

nusG

0.625

FMG_0095

0.504

FMG_0861

0.504

FMG_1334

0.504

FMG_1449

0.497

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FMG_0095	FMG_1448	FMG_0095	FMG_1448	Conserved hypothetical protein.	Transcription accessory protein; S1 RNA binding domain.	0.504
FMG_0095	rpoA	FMG_0095	FMG_0181	Conserved hypothetical protein.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651
FMG_0095	rpoB	FMG_0095	FMG_1118	Conserved hypothetical protein.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.551
FMG_0095	rpoZ	FMG_0095	FMG_0658	Conserved hypothetical protein.	Putative DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.500
FMG_0861	FMG_1448	FMG_0861	FMG_1448	TPR repeats containing protein.	Transcription accessory protein; S1 RNA binding domain.	0.504
FMG_0861	rpoA	FMG_0861	FMG_0181	TPR repeats containing protein.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651
FMG_0861	rpoB	FMG_0861	FMG_1118	TPR repeats containing protein.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.551
FMG_0861	rpoZ	FMG_0861	FMG_0658	TPR repeats containing protein.	Putative DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.500
FMG_1334	FMG_1448	FMG_1334	FMG_1448	Hypothetical protein.	Transcription accessory protein; S1 RNA binding domain.	0.504
FMG_1334	rpoA	FMG_1334	FMG_0181	Hypothetical protein.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.651
FMG_1334	rpoB	FMG_1334	FMG_1118	Hypothetical protein.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.551
FMG_1334	rpoZ	FMG_1334	FMG_0658	Hypothetical protein.	Putative DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.500
FMG_1447	FMG_1448	FMG_1447	FMG_1448	Conserved hypothetical protein.	Transcription accessory protein; S1 RNA binding domain.	0.646
FMG_1447	FMG_1449	FMG_1447	FMG_1449	Conserved hypothetical protein.	Hypothetical protein.	0.425
FMG_1448	FMG_0095	FMG_1448	FMG_0095	Transcription accessory protein; S1 RNA binding domain.	Conserved hypothetical protein.	0.504
FMG_1448	FMG_0861	FMG_1448	FMG_0861	Transcription accessory protein; S1 RNA binding domain.	TPR repeats containing protein.	0.504
FMG_1448	FMG_1334	FMG_1448	FMG_1334	Transcription accessory protein; S1 RNA binding domain.	Hypothetical protein.	0.504
FMG_1448	FMG_1447	FMG_1448	FMG_1447	Transcription accessory protein; S1 RNA binding domain.	Conserved hypothetical protein.	0.646
FMG_1448	FMG_1449	FMG_1448	FMG_1449	Transcription accessory protein; S1 RNA binding domain.	Hypothetical protein.	0.497
FMG_1448	greA	FMG_1448	FMG_0988	Transcription accessory protein; S1 RNA binding domain.	Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.643