Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACOC_LOCUS1256Ubiquitin carboxyl-terminal hydrolase. (288 aa)    
Predicted Functional Partners:
ACOC_LOCUS5238
CSN8_PSD8_EIF3K domain-containing protein.
   
 0.994
ACOC_LOCUS1835
MPN domain-containing protein.
   
 0.991
ACOC_LOCUS8614
PCI domain-containing protein.
   
 0.990
ACOC_LOCUS5399
RPN13_C domain-containing protein.
    
 0.988
ACOC_LOCUS6137
Uncharacterized protein.
    
 0.988
ACOC_LOCUS5848
MPN domain-containing protein.
   
 0.986
ACOC_LOCUS133
VWFA domain-containing protein.
   
 
 0.985
ACOC_LOCUS2195
PCI domain-containing protein.
   
 0.985
A0A0R3PXS5
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.
   
 0.985
A0A0R3PYX9
PCI domain-containing protein.
   
 0.985
Your Current Organism:
Angiostrongylus costaricensis
NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis
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