ACOC_LOCUS2997 protein (Angiostrongylus costaricensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACOC_LOCUS2997

Guanylate cyclase domain-containing protein. (214 aa)

Predicted Functional Partners:

A0A0R3Q057

0.903

ACOC_LOCUS826

0.903

ACOC_LOCUS828

0.902

ACOC_LOCUS831

0.902

ACOC_LOCUS4647

0.819

ACOC_LOCUS209

0.809

ACOC_LOCUS7791

0.799

ACOC_LOCUS10

0.683

ACOC_LOCUS7792

0.657

ACOC_LOCUS5986

0.644

Your Current Organism:

Angiostrongylus costaricensis

NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3Q057	ACOC_LOCUS209	A0A0R3Q057	A0A158PD32	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.903
A0A0R3Q057	ACOC_LOCUS2997	A0A0R3Q057	A0A0R3PFM5	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.903
A0A0R3Q057	ACOC_LOCUS4647	A0A0R3Q057	A0A158PG04	Uncharacterized protein.	Uncharacterized protein.	0.939
A0A0R3Q057	ACOC_LOCUS828	A0A0R3Q057	A0A0R3PB16	Uncharacterized protein.	Uncharacterized protein.	0.802
A0A0R3Q057	ACOC_LOCUS831	A0A0R3Q057	A0A3P7H4E6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.564
ACOC_LOCUS10	ACOC_LOCUS209	A0A0R3P9E1	A0A158PD32	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Guanylate cyclase domain-containing protein.	0.683
ACOC_LOCUS10	ACOC_LOCUS2997	A0A0R3P9E1	A0A0R3PFM5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Guanylate cyclase domain-containing protein.	0.683
ACOC_LOCUS10	ACOC_LOCUS7791	A0A0R3P9E1	A0A158PIP2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Guanylate cyclase domain-containing protein.	0.778
ACOC_LOCUS10	ACOC_LOCUS7792	A0A0R3P9E1	A0A0R3PQV5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Guanylate cyclase domain-containing protein.	0.936
ACOC_LOCUS209	A0A0R3Q057	A0A158PD32	A0A0R3Q057	Guanylate cyclase domain-containing protein.	Uncharacterized protein.	0.903
ACOC_LOCUS209	ACOC_LOCUS10	A0A158PD32	A0A0R3P9E1	Guanylate cyclase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.683
ACOC_LOCUS209	ACOC_LOCUS2997	A0A158PD32	A0A0R3PFM5	Guanylate cyclase domain-containing protein.	Guanylate cyclase domain-containing protein.	0.809
ACOC_LOCUS209	ACOC_LOCUS4647	A0A158PD32	A0A158PG04	Guanylate cyclase domain-containing protein.	Uncharacterized protein.	0.819
ACOC_LOCUS209	ACOC_LOCUS5986	A0A158PD32	A0A3P7HA12	Guanylate cyclase domain-containing protein.	Uncharacterized protein.	0.644
ACOC_LOCUS209	ACOC_LOCUS7791	A0A158PD32	A0A158PIP2	Guanylate cyclase domain-containing protein.	Guanylate cyclase domain-containing protein.	0.711
ACOC_LOCUS209	ACOC_LOCUS7792	A0A158PD32	A0A0R3PQV5	Guanylate cyclase domain-containing protein.	Guanylate cyclase domain-containing protein.	0.686
ACOC_LOCUS209	ACOC_LOCUS826	A0A158PD32	A0A158PDL8	Guanylate cyclase domain-containing protein.	Uncharacterized protein.	0.903
ACOC_LOCUS209	ACOC_LOCUS828	A0A158PD32	A0A0R3PB16	Guanylate cyclase domain-containing protein.	Uncharacterized protein.	0.902
ACOC_LOCUS209	ACOC_LOCUS831	A0A158PD32	A0A3P7H4E6	Guanylate cyclase domain-containing protein.	Protein kinase domain-containing protein.	0.902
ACOC_LOCUS2997	A0A0R3Q057	A0A0R3PFM5	A0A0R3Q057	Guanylate cyclase domain-containing protein.	Uncharacterized protein.	0.903