ACOC_LOCUS3228 protein (Angiostrongylus costaricensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACOC_LOCUS3228

Uncharacterized protein. (651 aa)

Predicted Functional Partners:

A0A0R3PX21

0.994

ACOC_LOCUS1414

0.976

ACOC_LOCUS1755

0.962

ACOC_LOCUS3538

0.954

A0A0R3PX88

0.946

ACOC_LOCUS6186

0.931

A0A0R3Q0Z2

0.922

ACOC_LOCUS7721

0.913

ACOC_LOCUS2013

0.912

ACOC_LOCUS5028

0.910

Your Current Organism:

Angiostrongylus costaricensis

NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3PX21	A0A0R3PX88	A0A0R3PX21	A0A0R3PX88	Uncharacterized protein.	COX2_CUA domain-containing protein.	0.993
A0A0R3PX21	A0A0R3Q0Z2	A0A0R3PX21	A0A0R3Q0Z2	Uncharacterized protein.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.852
A0A0R3PX21	ACOC_LOCUS1414	A0A0R3PX21	A0A0R3PC96	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0R3PX21	ACOC_LOCUS1755	A0A0R3PX21	A0A3P7GX94	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.752
A0A0R3PX21	ACOC_LOCUS2013	A0A0R3PX21	A0A158PEH5	Uncharacterized protein.	Uncharacterized protein.	0.922
A0A0R3PX21	ACOC_LOCUS3228	A0A0R3PX21	A0A0R3PG57	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0R3PX21	ACOC_LOCUS3538	A0A0R3PX21	A0A0R3PGU2	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.949
A0A0R3PX21	ACOC_LOCUS5028	A0A0R3PX21	A0A0R3PKC4	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A0R3PX21	ACOC_LOCUS6186	A0A0R3PX21	A0A0R3PMN6	Uncharacterized protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.788
A0A0R3PX21	ACOC_LOCUS7721	A0A0R3PX21	A0A0R3PQQ8	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A0R3PX88	A0A0R3PX21	A0A0R3PX88	A0A0R3PX21	COX2_CUA domain-containing protein.	Uncharacterized protein.	0.993
A0A0R3PX88	A0A0R3Q0Z2	A0A0R3PX88	A0A0R3Q0Z2	COX2_CUA domain-containing protein.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.999
A0A0R3PX88	ACOC_LOCUS1414	A0A0R3PX88	A0A0R3PC96	COX2_CUA domain-containing protein.	Uncharacterized protein.	0.989
A0A0R3PX88	ACOC_LOCUS1755	A0A0R3PX88	A0A3P7GX94	COX2_CUA domain-containing protein.	Thioredoxin domain-containing protein.	0.997
A0A0R3PX88	ACOC_LOCUS2013	A0A0R3PX88	A0A158PEH5	COX2_CUA domain-containing protein.	Uncharacterized protein.	0.999
A0A0R3PX88	ACOC_LOCUS3228	A0A0R3PX88	A0A0R3PG57	COX2_CUA domain-containing protein.	Uncharacterized protein.	0.946
A0A0R3PX88	ACOC_LOCUS3538	A0A0R3PX88	A0A0R3PGU2	COX2_CUA domain-containing protein.	Cytochrome c domain-containing protein.	0.998
A0A0R3PX88	ACOC_LOCUS5028	A0A0R3PX88	A0A0R3PKC4	COX2_CUA domain-containing protein.	Uncharacterized protein.	0.999
A0A0R3PX88	ACOC_LOCUS6186	A0A0R3PX88	A0A0R3PMN6	COX2_CUA domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
A0A0R3PX88	ACOC_LOCUS7721	A0A0R3PX88	A0A0R3PQQ8	COX2_CUA domain-containing protein.	Uncharacterized protein.	0.911