STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACOC_LOCUS3641Uncharacterized protein. (247 aa)    
Predicted Functional Partners:
ACOC_LOCUS8722
RRM domain-containing protein.
  
0.906
ACOC_LOCUS7154
RRM domain-containing protein.
   
 0.886
ACOC_LOCUS1425
Uncharacterized protein.
   
 0.870
ACOC_LOCUS2697
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
0.857
ACOC_LOCUS155
RRM domain-containing protein.
   
 0.846
ACOC_LOCUS3542
Uncharacterized protein.
    
 0.824
A0A158PM79
Protein kinase domain-containing protein.
    
 0.824
ACOC_LOCUS1338
RRM domain-containing protein.
   
 0.818
ACOC_LOCUS6828
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.
    
 0.813
ACOC_LOCUS5390
RRM domain-containing protein.
   
 0.810
Your Current Organism:
Angiostrongylus costaricensis
NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis
Server load: low (12%) [HD]