ACOC_LOCUS6307 protein (Angiostrongylus costaricensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACOC_LOCUS6307

Beta-lactamase domain-containing protein. (206 aa)

Predicted Functional Partners:

A0A0R3PXI7

0.752

ACOC_LOCUS6342

0.593

ACOC_LOCUS3733

0.572

A0A0R3PVS2

0.558

ACOC_LOCUS6378

0.538

ACOC_LOCUS4353

0.538

ACOC_LOCUS647

0.511

ACOC_LOCUS9749

0.511

ACOC_LOCUS9751

0.511

A0A0R3PWJ9

0.511

Your Current Organism:

Angiostrongylus costaricensis

NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3PVS2	ACOC_LOCUS3733	A0A0R3PVS2	A0A0R3PHA5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0R3PVS2	ACOC_LOCUS4353	A0A0R3PVS2	A0A158PFS8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0R3PVS2	ACOC_LOCUS6307	A0A0R3PVS2	A0A0R3PMW8	Uncharacterized protein.	Beta-lactamase domain-containing protein.	0.558
A0A0R3PVS2	ACOC_LOCUS6342	A0A0R3PVS2	A0A0R3PMY7	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
A0A0R3PVS2	ACOC_LOCUS6378	A0A0R3PVS2	A0A0R3PN14	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0R3PWJ9	ACOC_LOCUS6307	A0A0R3PWJ9	A0A0R3PMW8	Uncharacterized protein.	Beta-lactamase domain-containing protein.	0.511
A0A0R3PXI7	ACOC_LOCUS6307	A0A0R3PXI7	A0A0R3PMW8	Uncharacterized protein.	Beta-lactamase domain-containing protein.	0.752
ACOC_LOCUS3733	A0A0R3PVS2	A0A0R3PHA5	A0A0R3PVS2	Uncharacterized protein.	Uncharacterized protein.	0.999
ACOC_LOCUS3733	ACOC_LOCUS4353	A0A0R3PHA5	A0A158PFS8	Uncharacterized protein.	Uncharacterized protein.	0.997
ACOC_LOCUS3733	ACOC_LOCUS6307	A0A0R3PHA5	A0A0R3PMW8	Uncharacterized protein.	Beta-lactamase domain-containing protein.	0.572
ACOC_LOCUS3733	ACOC_LOCUS6342	A0A0R3PHA5	A0A0R3PMY7	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
ACOC_LOCUS3733	ACOC_LOCUS6378	A0A0R3PHA5	A0A0R3PN14	Uncharacterized protein.	Uncharacterized protein.	0.997
ACOC_LOCUS4353	A0A0R3PVS2	A0A158PFS8	A0A0R3PVS2	Uncharacterized protein.	Uncharacterized protein.	0.999
ACOC_LOCUS4353	ACOC_LOCUS3733	A0A158PFS8	A0A0R3PHA5	Uncharacterized protein.	Uncharacterized protein.	0.997
ACOC_LOCUS4353	ACOC_LOCUS6307	A0A158PFS8	A0A0R3PMW8	Uncharacterized protein.	Beta-lactamase domain-containing protein.	0.538
ACOC_LOCUS4353	ACOC_LOCUS6342	A0A158PFS8	A0A0R3PMY7	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
ACOC_LOCUS6307	A0A0R3PVS2	A0A0R3PMW8	A0A0R3PVS2	Beta-lactamase domain-containing protein.	Uncharacterized protein.	0.558
ACOC_LOCUS6307	A0A0R3PWJ9	A0A0R3PMW8	A0A0R3PWJ9	Beta-lactamase domain-containing protein.	Uncharacterized protein.	0.511
ACOC_LOCUS6307	A0A0R3PXI7	A0A0R3PMW8	A0A0R3PXI7	Beta-lactamase domain-containing protein.	Uncharacterized protein.	0.752
ACOC_LOCUS6307	ACOC_LOCUS3733	A0A0R3PMW8	A0A0R3PHA5	Beta-lactamase domain-containing protein.	Uncharacterized protein.	0.572