ACOC_LOCUS9125 protein (Angiostrongylus costaricensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACOC_LOCUS9125

Uncharacterized protein. (345 aa)

Predicted Functional Partners:

A0A158PL21

0.974

ACOC_LOCUS6144

0.911

ACOC_LOCUS9726

0.911

ACOC_LOCUS5660

0.759

ACOC_LOCUS9003

0.720

ACOC_LOCUS528

0.720

ACOC_LOCUS4755

0.720

ACOC_LOCUS1206

0.701

ACOC_LOCUS8926

0.637

LSM1

0.614

Your Current Organism:

Angiostrongylus costaricensis

NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A158PL21	ACOC_LOCUS4755	A0A158PL21	A0A158PG30	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.810
A0A158PL21	ACOC_LOCUS528	A0A158PL21	A0A158PDC9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.810
A0A158PL21	ACOC_LOCUS5660	A0A158PL21	A0A0R3PLL5	Uncharacterized protein; Belongs to the DEAD box helicase family.	YjeF N-terminal domain-containing protein.	0.999
A0A158PL21	ACOC_LOCUS6144	A0A158PL21	A0A0R3PML0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Nudix hydrolase domain-containing protein.	0.994
A0A158PL21	ACOC_LOCUS8926	A0A158PL21	A0A3P7HIL3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.999
A0A158PL21	ACOC_LOCUS9003	A0A158PL21	A0A0R3PTB9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.984
A0A158PL21	ACOC_LOCUS9125	A0A158PL21	A0A0R3PTK4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.974
A0A158PL21	ACOC_LOCUS9726	A0A158PL21	A0A158PK82	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.997
A0A158PL21	LSM1	A0A158PL21	A0A0R3PAY5	Uncharacterized protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.998
ACOC_LOCUS1206	ACOC_LOCUS9125	A0A0R3PBU9	A0A0R3PTK4	RPOL4c domain-containing protein.	Uncharacterized protein.	0.701
ACOC_LOCUS4755	A0A158PL21	A0A158PG30	A0A158PL21	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.810
ACOC_LOCUS4755	ACOC_LOCUS9125	A0A158PG30	A0A0R3PTK4	Uncharacterized protein.	Uncharacterized protein.	0.720
ACOC_LOCUS528	A0A158PL21	A0A158PDC9	A0A158PL21	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.810
ACOC_LOCUS528	ACOC_LOCUS9125	A0A158PDC9	A0A0R3PTK4	Uncharacterized protein.	Uncharacterized protein.	0.720
ACOC_LOCUS5660	A0A158PL21	A0A0R3PLL5	A0A158PL21	YjeF N-terminal domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.999
ACOC_LOCUS5660	ACOC_LOCUS6144	A0A0R3PLL5	A0A0R3PML0	YjeF N-terminal domain-containing protein.	Nudix hydrolase domain-containing protein.	0.999
ACOC_LOCUS5660	ACOC_LOCUS8926	A0A0R3PLL5	A0A3P7HIL3	YjeF N-terminal domain-containing protein.	Uncharacterized protein.	0.980
ACOC_LOCUS5660	ACOC_LOCUS9125	A0A0R3PLL5	A0A0R3PTK4	YjeF N-terminal domain-containing protein.	Uncharacterized protein.	0.759
ACOC_LOCUS5660	ACOC_LOCUS9726	A0A0R3PLL5	A0A158PK82	YjeF N-terminal domain-containing protein.	Uncharacterized protein.	0.997
ACOC_LOCUS5660	LSM1	A0A0R3PLL5	A0A0R3PAY5	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.867