A0A0R3PX96 protein (Angiostrongylus costaricensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0R3PX96

Reverse transcriptase domain-containing protein. (414 aa)

Predicted Functional Partners:

ACOC_LOCUS5984

0.545

A0A0R3PYU8

0.484

ACOC_LOCUS1416

0.483

A0A0R3PZ25

0.482

ACOC_LOCUS8968

0.477

ACOC_LOCUS6044

0.457

ACOC_LOCUS7152

0.432

ACOC_LOCUS3089

0.418

A0A0R3Q1I2

0.418

Your Current Organism:

Angiostrongylus costaricensis

NCBI taxonomy Id: 334426
Other names: A. costaricensis, American rat lungworm, Angiostrongylus (Parastrongylus) costaricensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3PX96	A0A0R3PYU8	A0A0R3PX96	A0A0R3PYU8	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.484
A0A0R3PX96	A0A0R3PZ25	A0A0R3PX96	A0A0R3PZ25	Reverse transcriptase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.482
A0A0R3PX96	A0A0R3Q1I2	A0A0R3PX96	A0A0R3Q1I2	Reverse transcriptase domain-containing protein.	ERCC4 domain-containing protein.	0.418
A0A0R3PX96	ACOC_LOCUS1416	A0A0R3PX96	A0A3P7GW83	Reverse transcriptase domain-containing protein.	CRC domain-containing protein.	0.483
A0A0R3PX96	ACOC_LOCUS3089	A0A0R3PX96	A0A0R3PFU7	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.418
A0A0R3PX96	ACOC_LOCUS5984	A0A0R3PX96	A0A0R3PM96	Reverse transcriptase domain-containing protein.	DIRP domain-containing protein.	0.545
A0A0R3PX96	ACOC_LOCUS6044	A0A0R3PX96	A0A0R3PMD7	Reverse transcriptase domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.457
A0A0R3PX96	ACOC_LOCUS7152	A0A0R3PX96	A0A158PI43	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.432
A0A0R3PX96	ACOC_LOCUS8968	A0A0R3PX96	A0A158PJN0	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.477
A0A0R3PYU8	A0A0R3PX96	A0A0R3PYU8	A0A0R3PX96	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.484
A0A0R3PYU8	A0A0R3PZ25	A0A0R3PYU8	A0A0R3PZ25	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.973
A0A0R3PYU8	ACOC_LOCUS1416	A0A0R3PYU8	A0A3P7GW83	Uncharacterized protein.	CRC domain-containing protein.	0.989
A0A0R3PYU8	ACOC_LOCUS5984	A0A0R3PYU8	A0A0R3PM96	Uncharacterized protein.	DIRP domain-containing protein.	0.997
A0A0R3PZ25	A0A0R3PX96	A0A0R3PZ25	A0A0R3PX96	WD_REPEATS_REGION domain-containing protein.	Reverse transcriptase domain-containing protein.	0.482
A0A0R3PZ25	A0A0R3PYU8	A0A0R3PZ25	A0A0R3PYU8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.973
A0A0R3PZ25	ACOC_LOCUS1416	A0A0R3PZ25	A0A3P7GW83	WD_REPEATS_REGION domain-containing protein.	CRC domain-containing protein.	0.987
A0A0R3PZ25	ACOC_LOCUS5984	A0A0R3PZ25	A0A0R3PM96	WD_REPEATS_REGION domain-containing protein.	DIRP domain-containing protein.	0.996
A0A0R3Q1I2	A0A0R3PX96	A0A0R3Q1I2	A0A0R3PX96	ERCC4 domain-containing protein.	Reverse transcriptase domain-containing protein.	0.418
A0A0R3Q1I2	ACOC_LOCUS3089	A0A0R3Q1I2	A0A0R3PFU7	ERCC4 domain-containing protein.	Uncharacterized protein.	0.942
A0A0R3Q1I2	ACOC_LOCUS6044	A0A0R3Q1I2	A0A0R3PMD7	ERCC4 domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.966