STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF26599.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)    
Predicted Functional Partners:
OOF28025.1
Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.819
OOF26597.1
With UgpABC is involved in uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.819
OOF26596.1
Glycerol-3-phosphate transporter permease; With UgpEC is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.810
ugpC
Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; Part of the UgpABCE glycerol-3-phosphate uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
OOF28023.1
3,4-dihydroxy-2-butanone-4-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.738
OOF25215.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.735
OOF26595.1
Sn-glycerol-3-phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.703
OOF26611.1
Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.632
OOF25815.1
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.535
OOF28022.1
6,7-dimethyl-8-ribityllumazine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
Your Current Organism:
Salinivibrio proteolyticus
NCBI taxonomy Id: 334715
Other names: CIP 106635 [[Salinivibrio costicola subsp. vallismortis]], CIP 109598, DSM 19052, DSM 8285 [[Salinivibrio costicola subsp. vallismortis]], JCM 15096 [[Salinivibrio costicola subsp. vallismortis]], S. proteolyticus, Salinivibrio costicola subsp. vallismortis, Salinivibrio costicola subsp. vallismortis Huang et al. 2000, Salinivibrio proteolyticus Ali Amoozegar et al. 2008 emend. Lopez-Hermoso et al. 2018, Salinivibrio sp. AF-2004, Salinivibrio sp. CBH450, Salinivibrio vallismortis, strain AF-2004, strain DV [[Salinivibrio costicola subsp. vallismortis]]
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