STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF25780.1Peptide chain release factor 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)    
Predicted Functional Partners:
OOF26845.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.946
OOF22784.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.921
OOF26234.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.912
OOF26546.1
50S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.911
OOF27279.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.907
OOF27178.1
50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.904
OOF22787.1
50S ribosomal protein L7/L12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.903
OOF21393.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.894
OOF26893.1
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.891
OOF27284.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.889
Your Current Organism:
Salinivibrio proteolyticus
NCBI taxonomy Id: 334715
Other names: CIP 106635 [[Salinivibrio costicola subsp. vallismortis]], CIP 109598, DSM 19052, DSM 8285 [[Salinivibrio costicola subsp. vallismortis]], JCM 15096 [[Salinivibrio costicola subsp. vallismortis]], S. proteolyticus, Salinivibrio costicola subsp. vallismortis, Salinivibrio costicola subsp. vallismortis Huang et al. 2000, Salinivibrio proteolyticus Ali Amoozegar et al. 2008 emend. Lopez-Hermoso et al. 2018, Salinivibrio sp. AF-2004, Salinivibrio sp. CBH450, Salinivibrio vallismortis, strain AF-2004, strain DV [[Salinivibrio costicola subsp. vallismortis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.