STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF24130.1Translation initiation factor IF-1; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)    
Predicted Functional Partners:
OOF27280.1
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OOF27282.1
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OOF27281.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.998
OOF27284.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OOF27286.1
50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
OOF27287.1
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
OOF27289.1
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OOF27290.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
OOF27291.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OOF27293.1
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
Your Current Organism:
Salinivibrio proteolyticus
NCBI taxonomy Id: 334715
Other names: CIP 106635 [[Salinivibrio costicola subsp. vallismortis]], CIP 109598, DSM 19052, DSM 8285 [[Salinivibrio costicola subsp. vallismortis]], JCM 15096 [[Salinivibrio costicola subsp. vallismortis]], S. proteolyticus, Salinivibrio costicola subsp. vallismortis, Salinivibrio costicola subsp. vallismortis Huang et al. 2000, Salinivibrio proteolyticus Ali Amoozegar et al. 2008 emend. Lopez-Hermoso et al. 2018, Salinivibrio sp. AF-2004, Salinivibrio sp. CBH450, Salinivibrio vallismortis, strain AF-2004, strain DV [[Salinivibrio costicola subsp. vallismortis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.