STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF23558.116S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
OOF23557.1
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
OOF23554.1
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.937
OOF23560.1
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.909
OOF23559.1
Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.832
OOF23553.1
Membrane protein insertase YidC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.697
OOF26194.1
GTPase Era; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
OOF27594.1
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.647
OOF23551.1
Ribonuclease P protein component; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.634
metG
methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.619
OOF26796.1
DNA topoisomerase IV subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.585
Your Current Organism:
Salinivibrio proteolyticus
NCBI taxonomy Id: 334715
Other names: CIP 106635 [[Salinivibrio costicola subsp. vallismortis]], CIP 109598, DSM 19052, DSM 8285 [[Salinivibrio costicola subsp. vallismortis]], JCM 15096 [[Salinivibrio costicola subsp. vallismortis]], S. proteolyticus, Salinivibrio costicola subsp. vallismortis, Salinivibrio costicola subsp. vallismortis Huang et al. 2000, Salinivibrio proteolyticus Ali Amoozegar et al. 2008 emend. Lopez-Hermoso et al. 2018, Salinivibrio sp. AF-2004, Salinivibrio sp. CBH450, Salinivibrio vallismortis, strain AF-2004, strain DV [[Salinivibrio costicola subsp. vallismortis]]
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