STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF23250.1Glyoxalase/bleomycin resistance/dioxygenase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
OOF23251.1
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.732
OOF26243.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.723
OOF23252.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.674
OOF26435.1
CRISPR-associated protein Cmr3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
OOF23254.1
N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.586
OOF21282.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.585
OOF21638.1
Phosphomethylpyrimidine synthase ThiC; Catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.581
BZJ19_13465
GNAT family N-acetyltransferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.573
OOF26434.1
Type III-B CRISPR-associated protein Cas10/Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
OOF26433.1
Type III-B CRISPR module RAMP protein Cmr1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
Your Current Organism:
Salinivibrio proteolyticus
NCBI taxonomy Id: 334715
Other names: CIP 106635 [[Salinivibrio costicola subsp. vallismortis]], CIP 109598, DSM 19052, DSM 8285 [[Salinivibrio costicola subsp. vallismortis]], JCM 15096 [[Salinivibrio costicola subsp. vallismortis]], S. proteolyticus, Salinivibrio costicola subsp. vallismortis, Salinivibrio costicola subsp. vallismortis Huang et al. 2000, Salinivibrio proteolyticus Ali Amoozegar et al. 2008 emend. Lopez-Hermoso et al. 2018, Salinivibrio sp. AF-2004, Salinivibrio sp. CBH450, Salinivibrio vallismortis, strain AF-2004, strain DV [[Salinivibrio costicola subsp. vallismortis]]
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