STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOF22329.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)    
Predicted Functional Partners:
OOF21016.1
23S rRNA pseudouridine(1911/1915/1917) synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.881
OOF27178.1
50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.879
OOF23789.1
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.836
OOF27281.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.829
OOF27279.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.827
OOF26618.1
50S ribosomal protein L25; The Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.823
OOF27282.1
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.821
OOF27291.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.821
OOF26234.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.821
OOF27286.1
50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.818
Your Current Organism:
Salinivibrio proteolyticus
NCBI taxonomy Id: 334715
Other names: CIP 106635 [[Salinivibrio costicola subsp. vallismortis]], CIP 109598, DSM 19052, DSM 8285 [[Salinivibrio costicola subsp. vallismortis]], JCM 15096 [[Salinivibrio costicola subsp. vallismortis]], S. proteolyticus, Salinivibrio costicola subsp. vallismortis, Salinivibrio costicola subsp. vallismortis Huang et al. 2000, Salinivibrio proteolyticus Ali Amoozegar et al. 2008 emend. Lopez-Hermoso et al. 2018, Salinivibrio sp. AF-2004, Salinivibrio sp. CBH450, Salinivibrio vallismortis, strain AF-2004, strain DV [[Salinivibrio costicola subsp. vallismortis]]
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