STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000826145_01561Unannotated protein. (334 aa)    
Predicted Functional Partners:
GCA_000826145_01560
Unannotated protein.
 
 0.999
GCA_000826145_01562
Unannotated protein.
  
  
 0.918
GCA_000826145_01985
Unannotated protein.
    
   0.884
GCA_000826145_01394
Unannotated protein.
 
 
 0.882
GCA_000826145_00853
Unannotated protein.
    
 0.877
GCA_000826145_00852
Unannotated protein.
 
 
 0.876
GCA_000826145_01112
Unannotated protein.
 
 
 0.868
GCA_000826145_01627
Unannotated protein.
  
 
 0.840
GCA_000826145_00608
Unannotated protein.
 
  
 0.808
GCA_000826145_02172
Unannotated protein.
 
 
 0.798
Your Current Organism:
Sporosarcina koreensis
NCBI taxonomy Id: 334735
Other names: DSM 16921, JCM 16400, KACC 11299, S. koreensis, Sporosarcina koreensis Kwon et al. 2007, Sporosarcina sp. F73, strain F73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.