ENSGAFP00000000042 protein (Gambusia affinis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSGAFP00000000042

annotation not available (225 aa)

Predicted Functional Partners:

CCH79_00016333

0.901

CCH79_00013146

0.901

ENSGAFP00000003099

0.671

CCH79_00006927

0.621

CCH79_00015521

0.616

CCH79_00014795

0.605

CCH79_00013575

0.578

CCH79_00006832

0.572

CCH79_00010520

0.531

ENSGAFP00000009889

0.529

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00006832	CCH79_00014795	ENSGAFP00000014051	ENSGAFP00000009421	Tudor domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.997
CCH79_00006832	ENSGAFP00000000042	ENSGAFP00000014051	ENSGAFP00000000042	Tudor domain-containing protein.	annotation not available	0.572
CCH79_00006832	ENSGAFP00000009889	ENSGAFP00000014051	ENSGAFP00000009889	Tudor domain-containing protein.	Small nuclear ribonucleoprotein polypeptide E.	0.983
CCH79_00006927	CCH79_00010520	ENSGAFP00000016954	ENSGAFP00000007726	Uncharacterized protein.	Uncharacterized protein.	0.838
CCH79_00006927	CCH79_00013575	ENSGAFP00000016954	ENSGAFP00000006664	Uncharacterized protein.	DNA polymerase.	0.999
CCH79_00006927	CCH79_00015521	ENSGAFP00000016954	ENSGAFP00000025902	Uncharacterized protein.	ERCC4 domain-containing protein.	0.426
CCH79_00006927	ENSGAFP00000000042	ENSGAFP00000016954	ENSGAFP00000000042	Uncharacterized protein.	annotation not available	0.621
CCH79_00006927	ENSGAFP00000003099	ENSGAFP00000016954	ENSGAFP00000003099	Uncharacterized protein.	annotation not available	0.725
CCH79_00010520	CCH79_00006927	ENSGAFP00000007726	ENSGAFP00000016954	Uncharacterized protein.	Uncharacterized protein.	0.838
CCH79_00010520	CCH79_00013575	ENSGAFP00000007726	ENSGAFP00000006664	Uncharacterized protein.	DNA polymerase.	0.945
CCH79_00010520	CCH79_00015521	ENSGAFP00000007726	ENSGAFP00000025902	Uncharacterized protein.	ERCC4 domain-containing protein.	0.948
CCH79_00010520	ENSGAFP00000000042	ENSGAFP00000007726	ENSGAFP00000000042	Uncharacterized protein.	annotation not available	0.531
CCH79_00010520	ENSGAFP00000003099	ENSGAFP00000007726	ENSGAFP00000003099	Uncharacterized protein.	annotation not available	0.961
CCH79_00013146	ENSGAFP00000000042	ENSGAFP00000004925	ENSGAFP00000000042	Ig-like domain-containing protein.	annotation not available	0.901
CCH79_00013575	CCH79_00006927	ENSGAFP00000006664	ENSGAFP00000016954	DNA polymerase.	Uncharacterized protein.	0.999
CCH79_00013575	CCH79_00010520	ENSGAFP00000006664	ENSGAFP00000007726	DNA polymerase.	Uncharacterized protein.	0.945
CCH79_00013575	CCH79_00015521	ENSGAFP00000006664	ENSGAFP00000025902	DNA polymerase.	ERCC4 domain-containing protein.	0.888
CCH79_00013575	ENSGAFP00000000042	ENSGAFP00000006664	ENSGAFP00000000042	DNA polymerase.	annotation not available	0.578
CCH79_00013575	ENSGAFP00000003099	ENSGAFP00000006664	ENSGAFP00000003099	DNA polymerase.	annotation not available	0.940
CCH79_00014795	CCH79_00006832	ENSGAFP00000009421	ENSGAFP00000014051	Uncharacterized protein; Belongs to the DEAD box helicase family.	Tudor domain-containing protein.	0.997