STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00007440Uncharacterized protein. (466 aa)    
Predicted Functional Partners:
CCH79_00012553
Uncharacterized protein.
   
 0.990
CCH79_00015748
Uncharacterized protein.
  
  
 0.890
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.862
ENSGAFP00000020248
annotation not available
   
  
 0.848
CCH79_00006931
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.837
CCH79_00014618
WD_REPEATS_REGION domain-containing protein.
   
  
 0.830
CCH79_00000308
Brix domain-containing protein.
   
    0.827
CCH79_00000782
Uncharacterized protein.
   
    0.825
CCH79_00009951
Brix domain-containing protein.
   
    0.823
CCH79_00013390
Uncharacterized protein.
   
    0.821
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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