CCH79_00009748 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00009748

E_Pc_C domain-containing protein. (201 aa)

Predicted Functional Partners:

CCH79_00020192

0.975

CCH79_00007116

0.974

CCH79_00020269

0.972

CCH79_00020149

0.964

CCH79_00017827

0.963

CCH79_00021056

0.956

ENSGAFP00000032225

0.952

CCH79_00007090

0.950

CCH79_00002203

0.949

CCH79_00004880

0.940

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002203	CCH79_00004880	ENSGAFP00000022377	ENSGAFP00000007097	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	MRG domain-containing protein.	0.958
CCH79_00002203	CCH79_00007090	ENSGAFP00000022377	ENSGAFP00000019866	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein; Belongs to the actin family.	0.989
CCH79_00002203	CCH79_00007116	ENSGAFP00000022377	ENSGAFP00000020401	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein.	0.996
CCH79_00002203	CCH79_00009748	ENSGAFP00000022377	ENSGAFP00000001013	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	E_Pc_C domain-containing protein.	0.949
CCH79_00002203	CCH79_00017827	ENSGAFP00000022377	ENSGAFP00000024329	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein.	0.995
CCH79_00002203	CCH79_00020149	ENSGAFP00000022377	ENSGAFP00000025567	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein.	0.988
CCH79_00002203	CCH79_00020192	ENSGAFP00000022377	ENSGAFP00000023799	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Inhibitor of growth protein.	0.993
CCH79_00002203	CCH79_00020269	ENSGAFP00000022377	ENSGAFP00000015877	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein.	0.993
CCH79_00002203	CCH79_00021056	ENSGAFP00000022377	ENSGAFP00000007091	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.974
CCH79_00002203	ENSGAFP00000032225	ENSGAFP00000022377	ENSGAFP00000032225	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	RuvB-like AAA ATPase 1.	0.999
CCH79_00004880	CCH79_00002203	ENSGAFP00000007097	ENSGAFP00000022377	MRG domain-containing protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.958
CCH79_00004880	CCH79_00007090	ENSGAFP00000007097	ENSGAFP00000019866	MRG domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.941
CCH79_00004880	CCH79_00007116	ENSGAFP00000007097	ENSGAFP00000020401	MRG domain-containing protein.	Uncharacterized protein.	0.979
CCH79_00004880	CCH79_00009748	ENSGAFP00000007097	ENSGAFP00000001013	MRG domain-containing protein.	E_Pc_C domain-containing protein.	0.940
CCH79_00004880	CCH79_00017827	ENSGAFP00000007097	ENSGAFP00000024329	MRG domain-containing protein.	Uncharacterized protein.	0.965
CCH79_00004880	CCH79_00020149	ENSGAFP00000007097	ENSGAFP00000025567	MRG domain-containing protein.	Uncharacterized protein.	0.964
CCH79_00004880	CCH79_00020192	ENSGAFP00000007097	ENSGAFP00000023799	MRG domain-containing protein.	Inhibitor of growth protein.	0.976
CCH79_00004880	CCH79_00020269	ENSGAFP00000007097	ENSGAFP00000015877	MRG domain-containing protein.	Uncharacterized protein.	0.984
CCH79_00004880	CCH79_00021056	ENSGAFP00000007097	ENSGAFP00000007091	MRG domain-containing protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.959
CCH79_00004880	ENSGAFP00000032225	ENSGAFP00000007097	ENSGAFP00000032225	MRG domain-containing protein.	RuvB-like AAA ATPase 1.	0.950