CCH79_00014108 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00014108

PBPe domain-containing protein. (1105 aa)

Predicted Functional Partners:

GRIK3

0.696

GRIK2

0.696

CCH79_00000436

0.696

CCH79_00002290

0.696

CCH79_00012121

0.696

CCH79_00010095

0.584

ENSGAFP00000032110

0.560

CCH79_00011872

0.551

CCH79_00000373

0.550

CCH79_00001946

0.545

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000373	CCH79_00000436	ENSGAFP00000016118	ENSGAFP00000019440	Uncharacterized protein.	Uncharacterized protein.	0.550
CCH79_00000373	CCH79_00001946	ENSGAFP00000016118	ENSGAFP00000004760	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.505
CCH79_00000373	CCH79_00002290	ENSGAFP00000016118	ENSGAFP00000028811	Uncharacterized protein.	Uncharacterized protein.	0.550
CCH79_00000373	CCH79_00011872	ENSGAFP00000016118	ENSGAFP00000014430	Uncharacterized protein.	NYD-SP28 domain-containing protein.	0.425
CCH79_00000373	CCH79_00012121	ENSGAFP00000016118	ENSGAFP00000030611	Uncharacterized protein.	Uncharacterized protein.	0.550
CCH79_00000373	CCH79_00014108	ENSGAFP00000016118	ENSGAFP00000001014	Uncharacterized protein.	PBPe domain-containing protein.	0.550
CCH79_00000373	GRIK2	ENSGAFP00000016118	ENSGAFP00000013603	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.550
CCH79_00000373	GRIK3	ENSGAFP00000016118	ENSGAFP00000012598	Uncharacterized protein.	Uncharacterized protein.	0.550
CCH79_00000436	CCH79_00000373	ENSGAFP00000019440	ENSGAFP00000016118	Uncharacterized protein.	Uncharacterized protein.	0.550
CCH79_00000436	CCH79_00001946	ENSGAFP00000019440	ENSGAFP00000004760	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.576
CCH79_00000436	CCH79_00010095	ENSGAFP00000019440	ENSGAFP00000032480	Uncharacterized protein.	DUF4201 domain-containing protein.	0.584
CCH79_00000436	CCH79_00011872	ENSGAFP00000019440	ENSGAFP00000014430	Uncharacterized protein.	NYD-SP28 domain-containing protein.	0.551
CCH79_00000436	CCH79_00014108	ENSGAFP00000019440	ENSGAFP00000001014	Uncharacterized protein.	PBPe domain-containing protein.	0.696
CCH79_00001946	CCH79_00000373	ENSGAFP00000004760	ENSGAFP00000016118	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.505
CCH79_00001946	CCH79_00000436	ENSGAFP00000004760	ENSGAFP00000019440	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.576
CCH79_00001946	CCH79_00002290	ENSGAFP00000004760	ENSGAFP00000028811	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.576
CCH79_00001946	CCH79_00012121	ENSGAFP00000004760	ENSGAFP00000030611	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.576
CCH79_00001946	CCH79_00014108	ENSGAFP00000004760	ENSGAFP00000001014	Uncharacterized protein; Belongs to the MAGUK family.	PBPe domain-containing protein.	0.545
CCH79_00001946	ENSGAFP00000032110	ENSGAFP00000004760	ENSGAFP00000032110	Uncharacterized protein; Belongs to the MAGUK family.	annotation not available	0.499
CCH79_00001946	GRIK2	ENSGAFP00000004760	ENSGAFP00000013603	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.576