CCH79_00008264 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00008264

Signal transducer and activator of transcription. (787 aa)

Predicted Functional Partners:

CCH79_00000800

0.976

CCH79_00009021

0.976

CCH79_00013364

0.964

CCH79_00002907

0.964

ENSGAFP00000028171

0.964

ENSGAFP00000031908

0.964

CCH79_00008263

0.958

CCH79_00009449

0.935

CCH79_00013498

0.934

CCH79_00008181

0.933

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00000800	CCH79_00002907	ENSGAFP00000011365	ENSGAFP00000017239	Tyrosine-protein kinase.	Uncharacterized protein.	0.492
CCH79_00000800	CCH79_00008181	ENSGAFP00000011365	ENSGAFP00000023594	Tyrosine-protein kinase.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.523
CCH79_00000800	CCH79_00008263	ENSGAFP00000011365	ENSGAFP00000000858	Tyrosine-protein kinase.	Signal transducer and activator of transcription.	0.992
CCH79_00000800	CCH79_00008264	ENSGAFP00000011365	ENSGAFP00000001030	Tyrosine-protein kinase.	Signal transducer and activator of transcription.	0.976
CCH79_00000800	CCH79_00009021	ENSGAFP00000011365	ENSGAFP00000025192	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.901
CCH79_00000800	CCH79_00009449	ENSGAFP00000011365	ENSGAFP00000012650	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.918
CCH79_00000800	CCH79_00013364	ENSGAFP00000011365	ENSGAFP00000011370	Tyrosine-protein kinase.	Uncharacterized protein.	0.492
CCH79_00000800	ENSGAFP00000028171	ENSGAFP00000011365	ENSGAFP00000028171	Tyrosine-protein kinase.	annotation not available	0.492
CCH79_00000800	ENSGAFP00000031908	ENSGAFP00000011365	ENSGAFP00000031908	Tyrosine-protein kinase.	annotation not available	0.492
CCH79_00002907	CCH79_00000800	ENSGAFP00000017239	ENSGAFP00000011365	Uncharacterized protein.	Tyrosine-protein kinase.	0.492
CCH79_00002907	CCH79_00008181	ENSGAFP00000017239	ENSGAFP00000023594	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.492
CCH79_00002907	CCH79_00008263	ENSGAFP00000017239	ENSGAFP00000000858	Uncharacterized protein.	Signal transducer and activator of transcription.	0.612
CCH79_00002907	CCH79_00008264	ENSGAFP00000017239	ENSGAFP00000001030	Uncharacterized protein.	Signal transducer and activator of transcription.	0.964
CCH79_00002907	CCH79_00009021	ENSGAFP00000017239	ENSGAFP00000025192	Uncharacterized protein.	Tyrosine-protein kinase.	0.492
CCH79_00002907	CCH79_00009449	ENSGAFP00000017239	ENSGAFP00000012650	Uncharacterized protein.	Tyrosine-protein kinase.	0.492
CCH79_00002907	CCH79_00013364	ENSGAFP00000017239	ENSGAFP00000011370	Uncharacterized protein.	Uncharacterized protein.	0.901
CCH79_00002907	CCH79_00013498	ENSGAFP00000017239	ENSGAFP00000021177	Uncharacterized protein.	Tyrosine-protein kinase.	0.492
CCH79_00008181	CCH79_00000800	ENSGAFP00000023594	ENSGAFP00000011365	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Tyrosine-protein kinase.	0.523
CCH79_00008181	CCH79_00002907	ENSGAFP00000023594	ENSGAFP00000017239	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.492
CCH79_00008181	CCH79_00008263	ENSGAFP00000023594	ENSGAFP00000000858	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Signal transducer and activator of transcription.	0.959