Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCH79_00012024IF rod domain-containing protein; Belongs to the intermediate filament family. (904 aa)    
Predicted Functional Partners:
CCH79_00004429
Uncharacterized protein.
    
 0.750
CCH79_00002878
Uncharacterized protein.
    
 0.673
CCH79_00012598
Uncharacterized protein.
    
 0.561
ENSGAFP00000031137
annotation not available
    
 0.553
ENSGAFP00000002795
Retinoblastoma binding protein 5.
    
 0.538
CCH79_00001264
B30.2/SPRY domain-containing protein.
    
 0.538
CCH79_00012071
Uncharacterized protein.
    
  0.530
ENSGAFP00000030947
Nucleoporin 107.
    
 0.519
ENSGAFP00000026704
Nucleoporin 133.
    
 0.515
ENSGAFP00000021548
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.508
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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