CCH79_00016411 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00016411

Uncharacterized protein. (825 aa)

Predicted Functional Partners:

ENSGAFP00000007177

0.801

CCH79_00006118

0.801

ENSGAFP00000012493

0.801

CCH79_00017211

0.633

ENSGAFP00000005931

0.633

ENSGAFP00000005965

0.633

ENSGAFP00000032043

0.591

CCH79_00017677

0.582

ENSGAFP00000008651

0.582

CCH79_00018407

0.582

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00006118	CCH79_00016411	ENSGAFP00000012470	ENSGAFP00000001046	Uncharacterized protein.	Uncharacterized protein.	0.801
CCH79_00006118	CCH79_00017211	ENSGAFP00000012470	ENSGAFP00000005914	Uncharacterized protein.	Uncharacterized protein.	0.731
CCH79_00006118	CCH79_00017677	ENSGAFP00000012470	ENSGAFP00000006679	Uncharacterized protein.	Uncharacterized protein.	0.955
CCH79_00006118	CCH79_00018407	ENSGAFP00000012470	ENSGAFP00000027111	Uncharacterized protein.	Uncharacterized protein.	0.955
CCH79_00006118	ENSGAFP00000005931	ENSGAFP00000012470	ENSGAFP00000005931	Uncharacterized protein.	annotation not available	0.731
CCH79_00006118	ENSGAFP00000005965	ENSGAFP00000012470	ENSGAFP00000005965	Uncharacterized protein.	annotation not available	0.938
CCH79_00006118	ENSGAFP00000007177	ENSGAFP00000012470	ENSGAFP00000007177	Uncharacterized protein.	Intersectin 2a.	0.875
CCH79_00006118	ENSGAFP00000008651	ENSGAFP00000012470	ENSGAFP00000008651	Uncharacterized protein.	WASP actin nucleation promoting factor a.	0.955
CCH79_00006118	ENSGAFP00000012493	ENSGAFP00000012470	ENSGAFP00000012493	Uncharacterized protein.	Intersectin 2b.	0.986
CCH79_00006118	ENSGAFP00000032043	ENSGAFP00000012470	ENSGAFP00000032043	Uncharacterized protein.	NCK interacting protein with SH3 domain.	0.841
CCH79_00016411	CCH79_00006118	ENSGAFP00000001046	ENSGAFP00000012470	Uncharacterized protein.	Uncharacterized protein.	0.801
CCH79_00016411	CCH79_00017211	ENSGAFP00000001046	ENSGAFP00000005914	Uncharacterized protein.	Uncharacterized protein.	0.633
CCH79_00016411	CCH79_00017677	ENSGAFP00000001046	ENSGAFP00000006679	Uncharacterized protein.	Uncharacterized protein.	0.582
CCH79_00016411	CCH79_00018407	ENSGAFP00000001046	ENSGAFP00000027111	Uncharacterized protein.	Uncharacterized protein.	0.582
CCH79_00016411	ENSGAFP00000005931	ENSGAFP00000001046	ENSGAFP00000005931	Uncharacterized protein.	annotation not available	0.633
CCH79_00016411	ENSGAFP00000005965	ENSGAFP00000001046	ENSGAFP00000005965	Uncharacterized protein.	annotation not available	0.633
CCH79_00016411	ENSGAFP00000007177	ENSGAFP00000001046	ENSGAFP00000007177	Uncharacterized protein.	Intersectin 2a.	0.801
CCH79_00016411	ENSGAFP00000008651	ENSGAFP00000001046	ENSGAFP00000008651	Uncharacterized protein.	WASP actin nucleation promoting factor a.	0.582
CCH79_00016411	ENSGAFP00000012493	ENSGAFP00000001046	ENSGAFP00000012493	Uncharacterized protein.	Intersectin 2b.	0.801
CCH79_00016411	ENSGAFP00000032043	ENSGAFP00000001046	ENSGAFP00000032043	Uncharacterized protein.	NCK interacting protein with SH3 domain.	0.591