Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00007487Transcription factor SOX. (368 aa)    
Predicted Functional Partners:
ENSGAFP00000009160
Transcription factor 7.
    
 0.707
CCH79_00007436
Uncharacterized protein.
    
 0.690
ENSGAFP00000009921
SRY-box transcription factor 13.
    
 0.648
CCH79_00009159
HMG box domain-containing protein.
    
 0.626
CCH79_00000778
POU domain protein.
    
 0.608
CCH79_00015844
Uncharacterized protein.
    
 
 0.602
CCH79_00012720
Uncharacterized protein.
    
 0.592
CCH79_00008501
Uncharacterized protein.
    
 0.592
CCH79_00001142
HMG box domain-containing protein.
    
 0.567
ENSGAFP00000005755
Transcription factor 7 like 2.
    
 0.567
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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