CCH79_00006469 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00006469

Uncharacterized protein. (1544 aa)

Predicted Functional Partners:

CCH79_00007313

0.933

CCH79_00017444

0.933

CCH79_00005988

0.933

CCH79_00007082

0.897

ENSGAFP00000019001

0.897

CCH79_00014230

0.855

CCH79_00010686

0.853

CCH79_00002780

0.799

CCH79_00013588

0.799

CCH79_00005018

0.799

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002780	CCH79_00005018	ENSGAFP00000005883	ENSGAFP00000018317	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.901
CCH79_00002780	CCH79_00005988	ENSGAFP00000005883	ENSGAFP00000011113	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.994
CCH79_00002780	CCH79_00006469	ENSGAFP00000005883	ENSGAFP00000001083	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.799
CCH79_00002780	CCH79_00007082	ENSGAFP00000005883	ENSGAFP00000005071	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.990
CCH79_00002780	CCH79_00007313	ENSGAFP00000005883	ENSGAFP00000006115	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_DE_N domain-containing protein.	0.997
CCH79_00002780	CCH79_00010686	ENSGAFP00000005883	ENSGAFP00000001198	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.994
CCH79_00002780	CCH79_00013588	ENSGAFP00000005883	ENSGAFP00000007471	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.420
CCH79_00002780	CCH79_00014230	ENSGAFP00000005883	ENSGAFP00000024800	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.995
CCH79_00002780	CCH79_00017444	ENSGAFP00000005883	ENSGAFP00000007198	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.996
CCH79_00002780	ENSGAFP00000019001	ENSGAFP00000005883	ENSGAFP00000019001	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase F1 subunit alpha.	0.986
CCH79_00005018	CCH79_00002780	ENSGAFP00000018317	ENSGAFP00000005883	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.901
CCH79_00005018	CCH79_00005988	ENSGAFP00000018317	ENSGAFP00000011113	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.994
CCH79_00005018	CCH79_00006469	ENSGAFP00000018317	ENSGAFP00000001083	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.799
CCH79_00005018	CCH79_00007082	ENSGAFP00000018317	ENSGAFP00000005071	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.990
CCH79_00005018	CCH79_00007313	ENSGAFP00000018317	ENSGAFP00000006115	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_DE_N domain-containing protein.	0.997
CCH79_00005018	CCH79_00010686	ENSGAFP00000018317	ENSGAFP00000001198	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.994
CCH79_00005018	CCH79_00013588	ENSGAFP00000018317	ENSGAFP00000007471	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.420
CCH79_00005018	CCH79_00014230	ENSGAFP00000018317	ENSGAFP00000024800	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.995
CCH79_00005018	CCH79_00017444	ENSGAFP00000018317	ENSGAFP00000007198	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.996
CCH79_00005018	ENSGAFP00000019001	ENSGAFP00000018317	ENSGAFP00000019001	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase F1 subunit alpha.	0.986