STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00001829Uncharacterized protein. (702 aa)    
Predicted Functional Partners:
CCH79_00016660
Uncharacterized protein.
   
 
 0.806
CCH79_00005287
Serine/threonine-protein kinase PLK.
   
 0.765
CCH79_00008937
Serine/threonine-protein kinase PLK.
   
 0.765
PLK1
Serine/threonine-protein kinase PLK.
   
 0.765
CCH79_00001787
Uncharacterized protein.
     
 0.630
ENSGAFP00000032326
Extra spindle pole bodies like 1, separase.
   
 0.627
CCH79_00007342
Uncharacterized protein.
    
  0.600
ENSGAFP00000008381
annotation not available
    
  0.600
ENSGAFP00000010510
RAB11B, member RAS oncogene family, b.
    
  0.600
ENSGAFP00000024524
RAB11a, member RAS oncogene family.
    
  0.600
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.