CCH79_00017789 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00017789

Tetraspanin. (226 aa)

Predicted Functional Partners:

CCH79_00013144

0.614

ENSGAFP00000010254

0.598

CCH79_00006239

0.577

CCH79_00015528

0.570

ENSGAFP00000006400

0.551

ENSGAFP00000006438

0.551

ENSGAFP00000013015

0.551

ENSGAFP00000015988

0.551

CCH79_00001520

0.547

CCH79_00002515

0.547

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001520	CCH79_00017789	ENSGAFP00000010062	ENSGAFP00000001101	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	Tetraspanin.	0.547
CCH79_00001520	ENSGAFP00000010254	ENSGAFP00000010062	ENSGAFP00000010254	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	annotation not available	0.488
CCH79_00002515	CCH79_00017789	ENSGAFP00000031402	ENSGAFP00000001101	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	Tetraspanin.	0.547
CCH79_00002515	ENSGAFP00000010254	ENSGAFP00000031402	ENSGAFP00000010254	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	annotation not available	0.488
CCH79_00006239	CCH79_00017789	ENSGAFP00000015346	ENSGAFP00000001101	Pyruvate kinase; Belongs to the pyruvate kinase family.	Tetraspanin.	0.577
CCH79_00013144	CCH79_00017789	ENSGAFP00000004896	ENSGAFP00000001101	Ig-like domain-containing protein.	Tetraspanin.	0.614
CCH79_00015528	CCH79_00017789	ENSGAFP00000025923	ENSGAFP00000001101	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Tetraspanin.	0.570
CCH79_00017789	CCH79_00001520	ENSGAFP00000001101	ENSGAFP00000010062	Tetraspanin.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.547
CCH79_00017789	CCH79_00002515	ENSGAFP00000001101	ENSGAFP00000031402	Tetraspanin.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.547
CCH79_00017789	CCH79_00006239	ENSGAFP00000001101	ENSGAFP00000015346	Tetraspanin.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.577
CCH79_00017789	CCH79_00013144	ENSGAFP00000001101	ENSGAFP00000004896	Tetraspanin.	Ig-like domain-containing protein.	0.614
CCH79_00017789	CCH79_00015528	ENSGAFP00000001101	ENSGAFP00000025923	Tetraspanin.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.570
CCH79_00017789	ENSGAFP00000006400	ENSGAFP00000001101	ENSGAFP00000006400	Tetraspanin.	annotation not available	0.551
CCH79_00017789	ENSGAFP00000006438	ENSGAFP00000001101	ENSGAFP00000006438	Tetraspanin.	annotation not available	0.551
CCH79_00017789	ENSGAFP00000010254	ENSGAFP00000001101	ENSGAFP00000010254	Tetraspanin.	annotation not available	0.598
CCH79_00017789	ENSGAFP00000013015	ENSGAFP00000001101	ENSGAFP00000013015	Tetraspanin.	Macrophage stimulating 1 receptor b.	0.551
CCH79_00017789	ENSGAFP00000015988	ENSGAFP00000001101	ENSGAFP00000015988	Tetraspanin.	Macrophage stimulating 1 receptor a.	0.551
ENSGAFP00000006400	CCH79_00017789	ENSGAFP00000006400	ENSGAFP00000001101	annotation not available	Tetraspanin.	0.551
ENSGAFP00000006400	ENSGAFP00000006438	ENSGAFP00000006400	ENSGAFP00000006438	annotation not available	annotation not available	0.951
ENSGAFP00000006400	ENSGAFP00000010254	ENSGAFP00000006400	ENSGAFP00000010254	annotation not available	annotation not available	0.582