Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00004067HMG box domain-containing protein. (318 aa)    
Predicted Functional Partners:
CCH79_00000360
Homeobox domain-containing protein.
   
 0.797
ENSGAFP00000002636
GATA binding protein 5.
    
 0.784
CCH79_00002967
Uncharacterized protein.
    
 
 0.711
CCH79_00017729
EGF-like domain-containing protein.
    
 
 0.706
CCH79_00008602
Uncharacterized protein.
    
 0.686
CCH79_00007817
Homeobox domain-containing protein.
      
 0.633
CCH79_00004640
Fork-head domain-containing protein.
    
 0.610
CCH79_00009098
TGF_BETA_2 domain-containing protein.
    
 0.605
CCH79_00009797
Uncharacterized protein.
    
 0.594
CCH79_00000753
Uncharacterized protein.
    
 0.594
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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