CCH79_00019249 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00019249

Uncharacterized protein. (223 aa)

Predicted Functional Partners:

CCH79_00008908

0.984

CCH79_00019671

0.966

PRLR

0.960

ENSGAFP00000001009

0.955

PRLR-2

0.909

CCH79_00015687

0.899

CCH79_00016473

0.864

ENSGAFP00000003573

0.842

CCH79_00020803

0.842

CCH79_00016108

0.804

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00008908	CCH79_00015687	ENSGAFP00000018107	ENSGAFP00000007496	Uncharacterized protein.	Uncharacterized protein.	0.760
CCH79_00008908	CCH79_00016108	ENSGAFP00000018107	ENSGAFP00000029724	Uncharacterized protein.	Uncharacterized protein.	0.760
CCH79_00008908	CCH79_00019249	ENSGAFP00000018107	ENSGAFP00000001160	Uncharacterized protein.	Uncharacterized protein.	0.984
CCH79_00008908	CCH79_00019671	ENSGAFP00000018107	ENSGAFP00000011608	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.897
CCH79_00008908	ENSGAFP00000001009	ENSGAFP00000018107	ENSGAFP00000001009	Uncharacterized protein.	Somatolactin alpha.	0.984
CCH79_00008908	PRLR-2	ENSGAFP00000018107	ENSGAFP00000017664	Uncharacterized protein.	Prolactin receptor; This is a receptor for the anterior pituitary hormone prolactin; Belongs to the type I cytokine receptor family. Type 1 subfamily.	0.738
CCH79_00015687	CCH79_00008908	ENSGAFP00000007496	ENSGAFP00000018107	Uncharacterized protein.	Uncharacterized protein.	0.760
CCH79_00015687	CCH79_00016108	ENSGAFP00000007496	ENSGAFP00000029724	Uncharacterized protein.	Uncharacterized protein.	0.938
CCH79_00015687	CCH79_00016473	ENSGAFP00000007496	ENSGAFP00000023543	Uncharacterized protein.	GLUCAGON domain-containing protein.	0.411
CCH79_00015687	CCH79_00019249	ENSGAFP00000007496	ENSGAFP00000001160	Uncharacterized protein.	Uncharacterized protein.	0.899
CCH79_00015687	CCH79_00019671	ENSGAFP00000007496	ENSGAFP00000011608	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.760
CCH79_00015687	CCH79_00020803	ENSGAFP00000007496	ENSGAFP00000005871	Uncharacterized protein.	Uncharacterized protein.	0.598
CCH79_00015687	ENSGAFP00000001009	ENSGAFP00000007496	ENSGAFP00000001009	Uncharacterized protein.	Somatolactin alpha.	0.815
CCH79_00015687	ENSGAFP00000003573	ENSGAFP00000007496	ENSGAFP00000003573	Uncharacterized protein.	annotation not available	0.598
CCH79_00015687	PRLR	ENSGAFP00000007496	ENSGAFP00000013365	Uncharacterized protein.	Prolactin receptor; This is a receptor for the anterior pituitary hormone prolactin; Belongs to the type I cytokine receptor family. Type 1 subfamily.	0.683
CCH79_00015687	PRLR-2	ENSGAFP00000007496	ENSGAFP00000017664	Uncharacterized protein.	Prolactin receptor; This is a receptor for the anterior pituitary hormone prolactin; Belongs to the type I cytokine receptor family. Type 1 subfamily.	0.992
CCH79_00016108	CCH79_00008908	ENSGAFP00000029724	ENSGAFP00000018107	Uncharacterized protein.	Uncharacterized protein.	0.760
CCH79_00016108	CCH79_00015687	ENSGAFP00000029724	ENSGAFP00000007496	Uncharacterized protein.	Uncharacterized protein.	0.938
CCH79_00016108	CCH79_00016473	ENSGAFP00000029724	ENSGAFP00000023543	Uncharacterized protein.	GLUCAGON domain-containing protein.	0.411
CCH79_00016108	CCH79_00019249	ENSGAFP00000029724	ENSGAFP00000001160	Uncharacterized protein.	Uncharacterized protein.	0.804