Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00020122Uncharacterized protein. (422 aa)    
Predicted Functional Partners:
CCH79_00011564
Uncharacterized protein.
    
 
 0.992
CCH79_00011933
DNA ligase.
    
 
 0.992
CCH79_00000359
Poly [ADP-ribose] polymerase.
    
 
 0.990
CCH79_00018838
DNA ligase.
    
 
 0.990
ENSGAFP00000031142
Poly (ADP-ribose) polymerase 2.
    
 
 0.989
CCH79_00004815
Uncharacterized protein.
    
 
 0.987
CCH79_00002867
Ku domain-containing protein.
    
 
 0.986
CCH79_00007018
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 
 0.980
CCH79_00011139
Uncharacterized protein.
    
 
 0.978
CCH79_00017947
Uncharacterized protein.
    
 
 0.974
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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