Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00003624Homeobox domain-containing protein. (278 aa)    
Predicted Functional Partners:
CCH79_00003716
Homeobox domain-containing protein.
    
 
 0.720
CCH79_00006877
Homeobox domain-containing protein.
   
 
 0.570
ENSGAFP00000026183
Small integral membrane protein 12.
      
 0.510
ENSGAFP00000000170
Succinate dehydrogenase complex, subunit A, flavoprotein (Fp).
   
  0.488
CCH79_00012206
Uncharacterized protein.
    
 
 0.431
ENSGAFP00000017154
Cytosolic thiouridylase subunit 2 homolog (S. pombe).
      
 0.423
ENSGAFP00000009643
Homeobox B9a.
    
 
 0.422
CCH79_00019839
CRAL-TRIO domain-containing protein.
      
 0.421
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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