CCH79_00010461 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00010461

Uncharacterized protein. (203 aa)

Predicted Functional Partners:

CCH79_00020632

0.740

CCH79_00019270

0.726

CCH79_00009697

0.726

NCBP1

0.653

CCH79_00009490

0.645

CCH79_00014921

0.640

ENSGAFP00000009889

0.634

CCH79_00019938

0.632

CCH79_00010574

0.618

CCH79_00007392

0.610

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00007392	CCH79_00009697	ENSGAFP00000010244	ENSGAFP00000031132	Uncharacterized protein.	RRM domain-containing protein.	0.610
CCH79_00007392	CCH79_00010461	ENSGAFP00000010244	ENSGAFP00000001337	Uncharacterized protein.	Uncharacterized protein.	0.610
CCH79_00007392	CCH79_00010574	ENSGAFP00000010244	ENSGAFP00000028212	Uncharacterized protein.	eIF2B_5 domain-containing protein.	0.701
CCH79_00007392	CCH79_00019270	ENSGAFP00000010244	ENSGAFP00000030404	Uncharacterized protein.	RRM domain-containing protein.	0.610
CCH79_00007392	CCH79_00020632	ENSGAFP00000010244	ENSGAFP00000019944	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.408
CCH79_00009490	CCH79_00009697	ENSGAFP00000015122	ENSGAFP00000031132	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	RRM domain-containing protein.	0.903
CCH79_00009490	CCH79_00010461	ENSGAFP00000015122	ENSGAFP00000001337	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Uncharacterized protein.	0.645
CCH79_00009490	CCH79_00014921	ENSGAFP00000015122	ENSGAFP00000024007	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Sm domain-containing protein.	0.967
CCH79_00009490	CCH79_00019270	ENSGAFP00000015122	ENSGAFP00000030404	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	RRM domain-containing protein.	0.903
CCH79_00009490	CCH79_00019938	ENSGAFP00000015122	ENSGAFP00000000136	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Small nuclear ribonucleoprotein G.	0.983
CCH79_00009490	CCH79_00020632	ENSGAFP00000015122	ENSGAFP00000019944	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.991
CCH79_00009490	ENSGAFP00000009889	ENSGAFP00000015122	ENSGAFP00000009889	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Small nuclear ribonucleoprotein polypeptide E.	0.984
CCH79_00009490	NCBP1	ENSGAFP00000015122	ENSGAFP00000026346	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	MIF4G domain-containing protein.	0.999
CCH79_00009697	CCH79_00007392	ENSGAFP00000031132	ENSGAFP00000010244	RRM domain-containing protein.	Uncharacterized protein.	0.610
CCH79_00009697	CCH79_00009490	ENSGAFP00000031132	ENSGAFP00000015122	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.903
CCH79_00009697	CCH79_00010461	ENSGAFP00000031132	ENSGAFP00000001337	RRM domain-containing protein.	Uncharacterized protein.	0.726
CCH79_00009697	CCH79_00010574	ENSGAFP00000031132	ENSGAFP00000028212	RRM domain-containing protein.	eIF2B_5 domain-containing protein.	0.442
CCH79_00009697	CCH79_00014921	ENSGAFP00000031132	ENSGAFP00000024007	RRM domain-containing protein.	Sm domain-containing protein.	0.856
CCH79_00009697	CCH79_00019270	ENSGAFP00000031132	ENSGAFP00000030404	RRM domain-containing protein.	RRM domain-containing protein.	0.901
CCH79_00009697	CCH79_00019938	ENSGAFP00000031132	ENSGAFP00000000136	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.852