STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00019622CSD_1 domain-containing protein. (158 aa)    
Predicted Functional Partners:
CCH79_00000772
Small nuclear ribonucleoprotein Sm D3.
   
 0.721
CCH79_00014921
Sm domain-containing protein.
    
  0.718
CCH79_00019938
Small nuclear ribonucleoprotein G.
    
  0.714
CCH79_00009490
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
   
  0.700
CCH79_00018942
RRM domain-containing protein.
  
 0.689
ENSGAFP00000009889
Small nuclear ribonucleoprotein polypeptide E.
   
 0.687
CCH79_00003631
Small nuclear ribonucleoprotein Sm D2.
    
  0.675
CCH79_00014779
Uncharacterized protein.
  
 
 0.674
NCBP1
MIF4G domain-containing protein.
    
  0.671
CCH79_00013799
DUF3453 domain-containing protein.
    
 0.669
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.