CCH79_00009758 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00009758

Uncharacterized protein. (286 aa)

Predicted Functional Partners:

ENSGAFP00000019712

0.906

CCH79_00015908

0.797

CCH79_00017966

0.690

CCH79_00013964

0.656

CCH79_00003486

0.646

CCH79_00015736

0.617

CCH79_00019033

0.598

ENSGAFP00000009781

0.570

CCH79_00017762

0.570

CCH79_00008245

0.568

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003486	CCH79_00009758	ENSGAFP00000002554	ENSGAFP00000001507	Thioredox_DsbH domain-containing protein.	Uncharacterized protein.	0.646
CCH79_00008245	CCH79_00009758	ENSGAFP00000026952	ENSGAFP00000001507	Uncharacterized protein; Belongs to the tubulin family.	Uncharacterized protein.	0.568
CCH79_00008245	CCH79_00015736	ENSGAFP00000026952	ENSGAFP00000008944	Uncharacterized protein; Belongs to the tubulin family.	Nitric oxide synthase-interacting protein; Negatively regulates nitric oxide production by inducing nitric oxide synthase translocation to actin cytoskeleton and inhibiting its enzymatic activity; Belongs to the NOSIP family.	0.511
CCH79_00009758	CCH79_00003486	ENSGAFP00000001507	ENSGAFP00000002554	Uncharacterized protein.	Thioredox_DsbH domain-containing protein.	0.646
CCH79_00009758	CCH79_00008245	ENSGAFP00000001507	ENSGAFP00000026952	Uncharacterized protein.	Uncharacterized protein; Belongs to the tubulin family.	0.568
CCH79_00009758	CCH79_00013964	ENSGAFP00000001507	ENSGAFP00000007515	Uncharacterized protein.	Uncharacterized protein.	0.656
CCH79_00009758	CCH79_00015736	ENSGAFP00000001507	ENSGAFP00000008944	Uncharacterized protein.	Nitric oxide synthase-interacting protein; Negatively regulates nitric oxide production by inducing nitric oxide synthase translocation to actin cytoskeleton and inhibiting its enzymatic activity; Belongs to the NOSIP family.	0.617
CCH79_00009758	CCH79_00015908	ENSGAFP00000001507	ENSGAFP00000003369	Uncharacterized protein.	C2H2-type domain-containing protein.	0.797
CCH79_00009758	CCH79_00017762	ENSGAFP00000001507	ENSGAFP00000010760	Uncharacterized protein.	BZIP domain-containing protein.	0.570
CCH79_00009758	CCH79_00017966	ENSGAFP00000001507	ENSGAFP00000029871	Uncharacterized protein.	E2F_TDP domain-containing protein.	0.690
CCH79_00009758	CCH79_00019033	ENSGAFP00000001507	ENSGAFP00000020372	Uncharacterized protein.	BZIP domain-containing protein.	0.598
CCH79_00009758	ENSGAFP00000009781	ENSGAFP00000001507	ENSGAFP00000009781	Uncharacterized protein.	Jun proto-oncogene, AP-1 transcription factor subunit.	0.570
CCH79_00009758	ENSGAFP00000019712	ENSGAFP00000001507	ENSGAFP00000019712	Uncharacterized protein.	Sp1 transcription factor.	0.906
CCH79_00013964	CCH79_00009758	ENSGAFP00000007515	ENSGAFP00000001507	Uncharacterized protein.	Uncharacterized protein.	0.656
CCH79_00015736	CCH79_00008245	ENSGAFP00000008944	ENSGAFP00000026952	Nitric oxide synthase-interacting protein; Negatively regulates nitric oxide production by inducing nitric oxide synthase translocation to actin cytoskeleton and inhibiting its enzymatic activity; Belongs to the NOSIP family.	Uncharacterized protein; Belongs to the tubulin family.	0.511
CCH79_00015736	CCH79_00009758	ENSGAFP00000008944	ENSGAFP00000001507	Nitric oxide synthase-interacting protein; Negatively regulates nitric oxide production by inducing nitric oxide synthase translocation to actin cytoskeleton and inhibiting its enzymatic activity; Belongs to the NOSIP family.	Uncharacterized protein.	0.617
CCH79_00015908	CCH79_00009758	ENSGAFP00000003369	ENSGAFP00000001507	C2H2-type domain-containing protein.	Uncharacterized protein.	0.797
CCH79_00017762	CCH79_00009758	ENSGAFP00000010760	ENSGAFP00000001507	BZIP domain-containing protein.	Uncharacterized protein.	0.570
CCH79_00017762	CCH79_00019033	ENSGAFP00000010760	ENSGAFP00000020372	BZIP domain-containing protein.	BZIP domain-containing protein.	0.990
CCH79_00017762	ENSGAFP00000009781	ENSGAFP00000010760	ENSGAFP00000009781	BZIP domain-containing protein.	Jun proto-oncogene, AP-1 transcription factor subunit.	0.900