CCH79_00009129 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00009129

Ig-like domain-containing protein. (986 aa)

Predicted Functional Partners:

CCH79_00001739

0.966

WDR63

0.942

ENSGAFP00000022335

0.941

CCH79_00020620

0.939

CCH79_00002673

0.926

TTC29

0.925

ENSGAFP00000032669

0.896

ENSGAFP00000012990

0.892

CFAP61

0.888

CCH79_00017678

0.875

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001739	CCH79_00002673	ENSGAFP00000015901	ENSGAFP00000031634	Uncharacterized protein.	Uncharacterized protein.	0.957
CCH79_00001739	CCH79_00009129	ENSGAFP00000015901	ENSGAFP00000001508	Uncharacterized protein.	Ig-like domain-containing protein.	0.966
CCH79_00001739	CCH79_00017678	ENSGAFP00000015901	ENSGAFP00000006732	Uncharacterized protein.	Uncharacterized protein.	0.869
CCH79_00001739	CCH79_00020620	ENSGAFP00000015901	ENSGAFP00000002998	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.964
CCH79_00001739	CFAP61	ENSGAFP00000015901	ENSGAFP00000021154	Uncharacterized protein.	Uncharacterized protein.	0.961
CCH79_00001739	ENSGAFP00000012990	ENSGAFP00000015901	ENSGAFP00000012990	Uncharacterized protein.	Dynein, axonemal, light intermediate chain 1.	0.918
CCH79_00001739	ENSGAFP00000022335	ENSGAFP00000015901	ENSGAFP00000022335	Uncharacterized protein.	annotation not available	0.944
CCH79_00001739	ENSGAFP00000032669	ENSGAFP00000015901	ENSGAFP00000032669	Uncharacterized protein.	annotation not available	0.971
CCH79_00001739	TTC29	ENSGAFP00000015901	ENSGAFP00000013152	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.975
CCH79_00001739	WDR63	ENSGAFP00000015901	ENSGAFP00000014582	Uncharacterized protein.	WD repeat domain 63.	0.946
CCH79_00002673	CCH79_00001739	ENSGAFP00000031634	ENSGAFP00000015901	Uncharacterized protein.	Uncharacterized protein.	0.957
CCH79_00002673	CCH79_00009129	ENSGAFP00000031634	ENSGAFP00000001508	Uncharacterized protein.	Ig-like domain-containing protein.	0.926
CCH79_00002673	CCH79_00017678	ENSGAFP00000031634	ENSGAFP00000006732	Uncharacterized protein.	Uncharacterized protein.	0.857
CCH79_00002673	CCH79_00020620	ENSGAFP00000031634	ENSGAFP00000002998	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.924
CCH79_00002673	CFAP61	ENSGAFP00000031634	ENSGAFP00000021154	Uncharacterized protein.	Uncharacterized protein.	0.955
CCH79_00002673	ENSGAFP00000012990	ENSGAFP00000031634	ENSGAFP00000012990	Uncharacterized protein.	Dynein, axonemal, light intermediate chain 1.	0.899
CCH79_00002673	ENSGAFP00000022335	ENSGAFP00000031634	ENSGAFP00000022335	Uncharacterized protein.	annotation not available	0.836
CCH79_00002673	ENSGAFP00000032669	ENSGAFP00000031634	ENSGAFP00000032669	Uncharacterized protein.	annotation not available	0.882
CCH79_00002673	TTC29	ENSGAFP00000031634	ENSGAFP00000013152	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.957
CCH79_00002673	WDR63	ENSGAFP00000031634	ENSGAFP00000014582	Uncharacterized protein.	WD repeat domain 63.	0.893