ENSGAFP00000001523 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000001523

Programmed cell death 5. (126 aa)

Predicted Functional Partners:

ENSGAFP00000009889

0.914

CCH79_00008233

0.909

ENSGAFP00000019158

0.906

ENSGAFP00000015374

0.905

CCH79_00009966

0.901

CCH79_00015727

0.897

CCH79_00018213

0.892

CCH79_00015879

0.874

CCH79_00001872

0.860

CCH79_00016146

0.850

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001872	CCH79_00008233	ENSGAFP00000001025	ENSGAFP00000026810	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
CCH79_00001872	CCH79_00009966	ENSGAFP00000001025	ENSGAFP00000022116	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
CCH79_00001872	CCH79_00015727	ENSGAFP00000001025	ENSGAFP00000008683	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
CCH79_00001872	CCH79_00015879	ENSGAFP00000001025	ENSGAFP00000010889	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	S4 RNA-binding domain-containing protein.	0.999
CCH79_00001872	CCH79_00018213	ENSGAFP00000001025	ENSGAFP00000023267	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
CCH79_00001872	ENSGAFP00000001523	ENSGAFP00000001025	ENSGAFP00000001523	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Programmed cell death 5.	0.860
CCH79_00001872	ENSGAFP00000015374	ENSGAFP00000001025	ENSGAFP00000015374	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L30.	0.999
CCH79_00001872	ENSGAFP00000019158	ENSGAFP00000001025	ENSGAFP00000019158	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein S28.	0.999
CCH79_00008233	CCH79_00001872	ENSGAFP00000026810	ENSGAFP00000001025	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
CCH79_00008233	CCH79_00009966	ENSGAFP00000026810	ENSGAFP00000022116	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.999
CCH79_00008233	CCH79_00015727	ENSGAFP00000026810	ENSGAFP00000008683	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
CCH79_00008233	CCH79_00015879	ENSGAFP00000026810	ENSGAFP00000010889	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	S4 RNA-binding domain-containing protein.	0.999
CCH79_00008233	CCH79_00018213	ENSGAFP00000026810	ENSGAFP00000023267	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
CCH79_00008233	ENSGAFP00000001523	ENSGAFP00000026810	ENSGAFP00000001523	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Programmed cell death 5.	0.909
CCH79_00008233	ENSGAFP00000009889	ENSGAFP00000026810	ENSGAFP00000009889	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Small nuclear ribonucleoprotein polypeptide E.	0.838
CCH79_00008233	ENSGAFP00000015374	ENSGAFP00000026810	ENSGAFP00000015374	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal protein L30.	0.999
CCH79_00008233	ENSGAFP00000019158	ENSGAFP00000026810	ENSGAFP00000019158	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal protein S28.	0.999
CCH79_00009966	CCH79_00001872	ENSGAFP00000022116	ENSGAFP00000001025	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
CCH79_00009966	CCH79_00008233	ENSGAFP00000022116	ENSGAFP00000026810	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
CCH79_00009966	CCH79_00015727	ENSGAFP00000022116	ENSGAFP00000008683	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999