CCH79_00016272 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00016272

DM domain-containing protein. (307 aa)

Predicted Functional Partners:

CCH79_00002268

0.816

CCH79_00017367

0.800

ENSGAFP00000008942

0.798

CCH79_00015623

0.798

ENSGAFP00000017961

0.792

CCH79_00019041

0.787

CCH79_00019046

0.758

CCH79_00010503

0.730

ENSGAFP00000011418

0.730

CCH79_00014927

0.730

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002268	CCH79_00010503	ENSGAFP00000024290	ENSGAFP00000003680	Uncharacterized protein.	Mitochondrial inner membrane protease subunit.	0.939
CCH79_00002268	CCH79_00014927	ENSGAFP00000024290	ENSGAFP00000024092	Uncharacterized protein.	Uncharacterized protein.	0.993
CCH79_00002268	CCH79_00015623	ENSGAFP00000024290	ENSGAFP00000023990	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
CCH79_00002268	CCH79_00016272	ENSGAFP00000024290	ENSGAFP00000001565	Uncharacterized protein.	DM domain-containing protein.	0.816
CCH79_00002268	CCH79_00017367	ENSGAFP00000024290	ENSGAFP00000022403	Uncharacterized protein.	DEP domain-containing protein.	0.990
CCH79_00002268	ENSGAFP00000008942	ENSGAFP00000024290	ENSGAFP00000008942	Uncharacterized protein.	WD repeat domain 59.	0.986
CCH79_00002268	ENSGAFP00000011418	ENSGAFP00000024290	ENSGAFP00000011418	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 4.	0.939
CCH79_00002268	ENSGAFP00000017961	ENSGAFP00000024290	ENSGAFP00000017961	Uncharacterized protein.	NPR2 like, GATOR1 complex subunit.	0.991
CCH79_00010503	CCH79_00002268	ENSGAFP00000003680	ENSGAFP00000024290	Mitochondrial inner membrane protease subunit.	Uncharacterized protein.	0.939
CCH79_00010503	CCH79_00015623	ENSGAFP00000003680	ENSGAFP00000023990	Mitochondrial inner membrane protease subunit.	WD_REPEATS_REGION domain-containing protein.	0.918
CCH79_00010503	CCH79_00016272	ENSGAFP00000003680	ENSGAFP00000001565	Mitochondrial inner membrane protease subunit.	DM domain-containing protein.	0.730
CCH79_00010503	CCH79_00017367	ENSGAFP00000003680	ENSGAFP00000022403	Mitochondrial inner membrane protease subunit.	DEP domain-containing protein.	0.914
CCH79_00010503	ENSGAFP00000008942	ENSGAFP00000003680	ENSGAFP00000008942	Mitochondrial inner membrane protease subunit.	WD repeat domain 59.	0.915
CCH79_00010503	ENSGAFP00000017961	ENSGAFP00000003680	ENSGAFP00000017961	Mitochondrial inner membrane protease subunit.	NPR2 like, GATOR1 complex subunit.	0.926
CCH79_00014927	CCH79_00002268	ENSGAFP00000024092	ENSGAFP00000024290	Uncharacterized protein.	Uncharacterized protein.	0.993
CCH79_00014927	CCH79_00015623	ENSGAFP00000024092	ENSGAFP00000023990	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.988
CCH79_00014927	CCH79_00016272	ENSGAFP00000024092	ENSGAFP00000001565	Uncharacterized protein.	DM domain-containing protein.	0.730
CCH79_00014927	CCH79_00017367	ENSGAFP00000024092	ENSGAFP00000022403	Uncharacterized protein.	DEP domain-containing protein.	0.992
CCH79_00014927	ENSGAFP00000008942	ENSGAFP00000024092	ENSGAFP00000008942	Uncharacterized protein.	WD repeat domain 59.	0.987
CCH79_00014927	ENSGAFP00000017961	ENSGAFP00000024092	ENSGAFP00000017961	Uncharacterized protein.	NPR2 like, GATOR1 complex subunit.	0.990