ENSGAFP00000001598 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000001598

annotation not available (391 aa)

Predicted Functional Partners:

CCH79_00002619

0.997

CCH79_00016380

0.979

CCH79_00015274

0.974

CCH79_00016459

0.972

CCH79_00001411

0.969

CCH79_00005574

0.969

RING1

0.966

CCH79_00016734

0.966

CCH79_00019234

0.966

CCH79_00020497

0.966

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00001411	CCH79_00002619	ENSGAFP00000005070	ENSGAFP00000031549	RING-type domain-containing protein.	Transcription factor.	0.902
CCH79_00001411	CCH79_00005574	ENSGAFP00000005070	ENSGAFP00000026214	RING-type domain-containing protein.	RING-type domain-containing protein.	0.458
CCH79_00001411	CCH79_00016380	ENSGAFP00000005070	ENSGAFP00000012034	RING-type domain-containing protein.	Uncharacterized protein.	0.959
CCH79_00001411	CCH79_00016459	ENSGAFP00000005070	ENSGAFP00000023213	RING-type domain-containing protein.	Uncharacterized protein.	0.952
CCH79_00001411	CCH79_00016734	ENSGAFP00000005070	ENSGAFP00000015875	RING-type domain-containing protein.	Uncharacterized protein.	0.909
CCH79_00001411	CCH79_00019234	ENSGAFP00000005070	ENSGAFP00000025411	RING-type domain-containing protein.	FCS-type domain-containing protein.	0.909
CCH79_00001411	CCH79_00020497	ENSGAFP00000005070	ENSGAFP00000030284	RING-type domain-containing protein.	RAWUL domain-containing protein.	0.972
CCH79_00001411	ENSGAFP00000001598	ENSGAFP00000005070	ENSGAFP00000001598	RING-type domain-containing protein.	annotation not available	0.969
CCH79_00001411	RING1	ENSGAFP00000005070	ENSGAFP00000001064	RING-type domain-containing protein.	RING-type domain-containing protein.	0.972
CCH79_00002619	CCH79_00001411	ENSGAFP00000031549	ENSGAFP00000005070	Transcription factor.	RING-type domain-containing protein.	0.902
CCH79_00002619	CCH79_00005574	ENSGAFP00000031549	ENSGAFP00000026214	Transcription factor.	RING-type domain-containing protein.	0.902
CCH79_00002619	CCH79_00015274	ENSGAFP00000031549	ENSGAFP00000030673	Transcription factor.	COMM domain-containing protein.	0.880
CCH79_00002619	CCH79_00016380	ENSGAFP00000031549	ENSGAFP00000012034	Transcription factor.	Uncharacterized protein.	0.922
CCH79_00002619	CCH79_00016459	ENSGAFP00000031549	ENSGAFP00000023213	Transcription factor.	Uncharacterized protein.	0.871
CCH79_00002619	CCH79_00016734	ENSGAFP00000031549	ENSGAFP00000015875	Transcription factor.	Uncharacterized protein.	0.922
CCH79_00002619	CCH79_00019234	ENSGAFP00000031549	ENSGAFP00000025411	Transcription factor.	FCS-type domain-containing protein.	0.922
CCH79_00002619	CCH79_00020497	ENSGAFP00000031549	ENSGAFP00000030284	Transcription factor.	RAWUL domain-containing protein.	0.692
CCH79_00002619	ENSGAFP00000001598	ENSGAFP00000031549	ENSGAFP00000001598	Transcription factor.	annotation not available	0.997
CCH79_00002619	RING1	ENSGAFP00000031549	ENSGAFP00000001064	Transcription factor.	RING-type domain-containing protein.	0.692
CCH79_00005574	CCH79_00001411	ENSGAFP00000026214	ENSGAFP00000005070	RING-type domain-containing protein.	RING-type domain-containing protein.	0.458