STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZRN4PDZ domain containing ring finger 4. (761 aa)    
Predicted Functional Partners:
CCH79_00018821
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.865
CCH79_00016885
Uncharacterized protein.
    
 0.848
ENSGAFP00000021072
Ribosomal protein S27a.
    
 0.825
ENSGAFP00000006885
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.802
CCH79_00006517
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.775
CCH79_00002220
Uncharacterized protein.
   
 0.775
CCH79_00010441
Death domain-containing protein.
    
 0.773
CCH79_00001659
Uncharacterized protein.
    
 0.730
CCH79_00014461
ECSIT_Cterm domain-containing protein.
    
 0.729
CCH79_00000305
Uncharacterized protein.
    
 0.728
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.