CCH79_00018300 protein (Gambusia affinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCH79_00018300

Uncharacterized protein. (323 aa)

Predicted Functional Partners:

CCH79_00009240

0.644

HAND1

0.586

PANX

0.559

OTOP1

0.522

CCH79_00014964

0.511

CCH79_00018414

0.507

CCH79_00003124

0.489

ENSGAFP00000012316

0.489

CCH79_00007109

0.421

ENSGAFP00000014739

0.418

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00003124	CCH79_00009240	ENSGAFP00000008223	ENSGAFP00000026576	Uncharacterized protein.	BHLH domain-containing protein.	0.695
CCH79_00003124	CCH79_00018300	ENSGAFP00000008223	ENSGAFP00000001690	Uncharacterized protein.	Uncharacterized protein.	0.489
CCH79_00003124	ENSGAFP00000012316	ENSGAFP00000008223	ENSGAFP00000012316	Uncharacterized protein.	Vinculin a.	0.901
CCH79_00003124	HAND1	ENSGAFP00000008223	ENSGAFP00000016749	Uncharacterized protein.	BHLH domain-containing protein.	0.538
CCH79_00007109	CCH79_00018300	ENSGAFP00000020317	ENSGAFP00000001690	AAA domain-containing protein.	Uncharacterized protein.	0.421
CCH79_00009240	CCH79_00003124	ENSGAFP00000026576	ENSGAFP00000008223	BHLH domain-containing protein.	Uncharacterized protein.	0.695
CCH79_00009240	CCH79_00018300	ENSGAFP00000026576	ENSGAFP00000001690	BHLH domain-containing protein.	Uncharacterized protein.	0.644
CCH79_00009240	ENSGAFP00000012316	ENSGAFP00000026576	ENSGAFP00000012316	BHLH domain-containing protein.	Vinculin a.	0.695
CCH79_00009240	HAND1	ENSGAFP00000026576	ENSGAFP00000016749	BHLH domain-containing protein.	BHLH domain-containing protein.	0.797
CCH79_00014964	CCH79_00018300	ENSGAFP00000025286	ENSGAFP00000001690	Uncharacterized protein; Belongs to the CD36 family.	Uncharacterized protein.	0.511
CCH79_00018300	CCH79_00003124	ENSGAFP00000001690	ENSGAFP00000008223	Uncharacterized protein.	Uncharacterized protein.	0.489
CCH79_00018300	CCH79_00007109	ENSGAFP00000001690	ENSGAFP00000020317	Uncharacterized protein.	AAA domain-containing protein.	0.421
CCH79_00018300	CCH79_00009240	ENSGAFP00000001690	ENSGAFP00000026576	Uncharacterized protein.	BHLH domain-containing protein.	0.644
CCH79_00018300	CCH79_00014964	ENSGAFP00000001690	ENSGAFP00000025286	Uncharacterized protein.	Uncharacterized protein; Belongs to the CD36 family.	0.511
CCH79_00018300	CCH79_00018414	ENSGAFP00000001690	ENSGAFP00000027171	Uncharacterized protein.	Anoctamin.	0.507
CCH79_00018300	ENSGAFP00000012316	ENSGAFP00000001690	ENSGAFP00000012316	Uncharacterized protein.	Vinculin a.	0.489
CCH79_00018300	ENSGAFP00000014739	ENSGAFP00000001690	ENSGAFP00000014739	Uncharacterized protein.	Translocator protein.	0.418
CCH79_00018300	HAND1	ENSGAFP00000001690	ENSGAFP00000016749	Uncharacterized protein.	BHLH domain-containing protein.	0.586
CCH79_00018300	OTOP1	ENSGAFP00000001690	ENSGAFP00000030452	Uncharacterized protein.	Otopetrin 1.	0.522
CCH79_00018300	PANX	ENSGAFP00000001690	ENSGAFP00000019677	Uncharacterized protein.	Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.	0.559