ENSGAFP00000001766 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAFP00000001766

annotation not available (309 aa)

Predicted Functional Partners:

CCH79_00018657

0.881

CCH79_00016348

0.827

ENSGAFP00000004332

0.827

CCH79_00018821

0.792

CCH79_00016885

0.717

CCH79_00002220

0.675

CCH79_00010485

0.657

CCH79_00010441

0.635

CCH79_00012471

0.627

ENSGAFP00000018652

0.618

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00002220	CCH79_00010441	ENSGAFP00000023184	ENSGAFP00000025901	Uncharacterized protein.	Death domain-containing protein.	0.836
CCH79_00002220	CCH79_00016885	ENSGAFP00000023184	ENSGAFP00000023685	Uncharacterized protein.	Uncharacterized protein.	0.838
CCH79_00002220	CCH79_00018657	ENSGAFP00000023184	ENSGAFP00000022369	Uncharacterized protein.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.587
CCH79_00002220	CCH79_00018821	ENSGAFP00000023184	ENSGAFP00000019597	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.904
CCH79_00002220	ENSGAFP00000001766	ENSGAFP00000023184	ENSGAFP00000001766	Uncharacterized protein.	annotation not available	0.675
CCH79_00010441	CCH79_00002220	ENSGAFP00000025901	ENSGAFP00000023184	Death domain-containing protein.	Uncharacterized protein.	0.836
CCH79_00010441	CCH79_00018821	ENSGAFP00000025901	ENSGAFP00000019597	Death domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.860
CCH79_00010441	ENSGAFP00000001766	ENSGAFP00000025901	ENSGAFP00000001766	Death domain-containing protein.	annotation not available	0.635
CCH79_00010485	CCH79_00012471	ENSGAFP00000002534	ENSGAFP00000014404	Uncharacterized protein.	Uncharacterized protein.	0.994
CCH79_00010485	ENSGAFP00000001766	ENSGAFP00000002534	ENSGAFP00000001766	Uncharacterized protein.	annotation not available	0.657
CCH79_00010485	ENSGAFP00000018652	ENSGAFP00000002534	ENSGAFP00000018652	Uncharacterized protein.	Centromere protein K.	0.989
CCH79_00012471	CCH79_00010485	ENSGAFP00000014404	ENSGAFP00000002534	Uncharacterized protein.	Uncharacterized protein.	0.994
CCH79_00012471	ENSGAFP00000001766	ENSGAFP00000014404	ENSGAFP00000001766	Uncharacterized protein.	annotation not available	0.627
CCH79_00012471	ENSGAFP00000018652	ENSGAFP00000014404	ENSGAFP00000018652	Uncharacterized protein.	Centromere protein K.	0.990
CCH79_00016348	CCH79_00018821	ENSGAFP00000002639	ENSGAFP00000019597	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.620
CCH79_00016348	ENSGAFP00000001766	ENSGAFP00000002639	ENSGAFP00000001766	Uncharacterized protein.	annotation not available	0.827
CCH79_00016348	ENSGAFP00000004332	ENSGAFP00000002639	ENSGAFP00000004332	Uncharacterized protein.	HESX homeobox 1.	0.996
CCH79_00016885	CCH79_00002220	ENSGAFP00000023685	ENSGAFP00000023184	Uncharacterized protein.	Uncharacterized protein.	0.838
CCH79_00016885	CCH79_00018657	ENSGAFP00000023685	ENSGAFP00000022369	Uncharacterized protein.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.574
CCH79_00016885	CCH79_00018821	ENSGAFP00000023685	ENSGAFP00000019597	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.793