Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH79_00003631Small nuclear ribonucleoprotein Sm D2. (118 aa)    
Predicted Functional Partners:
CCH79_00019938
Small nuclear ribonucleoprotein G.
   
 0.999
CCH79_00000772
Small nuclear ribonucleoprotein Sm D3.
   
 0.999
ENSGAFP00000009889
Small nuclear ribonucleoprotein polypeptide E.
   
 0.999
CCH79_00008815
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.999
CCH79_00014921
Sm domain-containing protein.
   
 0.999
CCH79_00011097
Sm domain-containing protein.
   
 0.999
CCH79_00019193
Sm domain-containing protein.
   
 0.999
ENSGAFP00000020586
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.998
ENSGAFP00000023893
Small nuclear ribonucleoprotein polypeptide C.
   
 0.998
ENSGAFP00000000328
Splicing factor 3b, subunit 5.
   
 0.996
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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