Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00018862G_PROTEIN_RECEP_F2_4 domain-containing protein. (637 aa)    
Predicted Functional Partners:
CCH79_00015254
Uncharacterized protein.
      
 0.695
CCH79_00016688
ACB domain-containing protein.
      
 0.694
CCH79_00009935
Uncharacterized protein.
      
 0.590
LLGL1
LLGL domain-containing protein.
    
 
 0.505
CCH79_00002111
JmjC domain-containing protein.
    
 
 0.504
KDM6B
Lysine demethylase 6B.
    
 
 0.504
ENSGAFP00000000245
Si:cabz01093077.1.
  
   
 0.485
CCH79_00001594
Uncharacterized protein.
      
 0.481
ENSGAFP00000031635
Nuclear receptor subfamily 1, group I, member 2.
    
 
 0.467
ENSGAFP00000003488
annotation not available
    
 0.462
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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