Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00002718Uncharacterized protein. (962 aa)    
Predicted Functional Partners:
CCH79_00015620
Rhomboid domain-containing protein.
      
 0.479
CCH79_00002708
Uncharacterized protein.
    
 0.473
CCH79_00015619
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
     
 0.448
CCH79_00015624
Uncharacterized protein.
    
 0.440
ST3GAL1
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
      
 0.436
CCH79_00002713
Uncharacterized protein.
      
 0.424
CCH79_00015623
WD_REPEATS_REGION domain-containing protein.
      
 0.416
ARHGAP6-2
Rho-GAP domain-containing protein.
      
 0.405
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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