ENSGAFP00000001852 protein (Gambusia affinis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Gene Fusion

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Co-expression

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[Homology]

Score

ENSGAFP00000001852

annotation not available (338 aa)

Predicted Functional Partners:

CCH79_00015379

0.988

CCH79_00010466

0.904

CCH79_00017597

0.894

CCH79_00016030

0.864

CCH79_00015086

0.857

CCH79_00009987

0.826

CCH79_00014617

0.819

CCH79_00019433

0.700

CCH79_00015046

0.655

ENSGAFP00000001536

0.628

Your Current Organism:

Gambusia affinis

NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH79_00009987	CCH79_00010466	ENSGAFP00000022427	ENSGAFP00000001577	Uncharacterized protein.	Uncharacterized protein.	0.977
CCH79_00009987	CCH79_00014617	ENSGAFP00000022427	ENSGAFP00000029916	Uncharacterized protein.	Uncharacterized protein.	0.954
CCH79_00009987	CCH79_00015086	ENSGAFP00000022427	ENSGAFP00000017295	Uncharacterized protein.	PB1 domain-containing protein.	0.988
CCH79_00009987	CCH79_00015379	ENSGAFP00000022427	ENSGAFP00000001749	Uncharacterized protein.	Uncharacterized protein.	0.401
CCH79_00009987	CCH79_00017597	ENSGAFP00000022427	ENSGAFP00000020107	Uncharacterized protein.	Uncharacterized protein.	0.989
CCH79_00009987	CCH79_00019433	ENSGAFP00000022427	ENSGAFP00000003417	Uncharacterized protein.	Uncharacterized protein.	0.974
CCH79_00009987	ENSGAFP00000001852	ENSGAFP00000022427	ENSGAFP00000001852	Uncharacterized protein.	annotation not available	0.826
CCH79_00010466	CCH79_00009987	ENSGAFP00000001577	ENSGAFP00000022427	Uncharacterized protein.	Uncharacterized protein.	0.977
CCH79_00010466	CCH79_00014617	ENSGAFP00000001577	ENSGAFP00000029916	Uncharacterized protein.	Uncharacterized protein.	0.989
CCH79_00010466	CCH79_00015086	ENSGAFP00000001577	ENSGAFP00000017295	Uncharacterized protein.	PB1 domain-containing protein.	0.996
CCH79_00010466	CCH79_00015379	ENSGAFP00000001577	ENSGAFP00000001749	Uncharacterized protein.	Uncharacterized protein.	0.413
CCH79_00010466	CCH79_00016030	ENSGAFP00000001577	ENSGAFP00000029170	Uncharacterized protein.	Uncharacterized protein.	0.977
CCH79_00010466	CCH79_00017597	ENSGAFP00000001577	ENSGAFP00000020107	Uncharacterized protein.	Uncharacterized protein.	0.999
CCH79_00010466	CCH79_00019433	ENSGAFP00000001577	ENSGAFP00000003417	Uncharacterized protein.	Uncharacterized protein.	0.998
CCH79_00010466	ENSGAFP00000001852	ENSGAFP00000001577	ENSGAFP00000001852	Uncharacterized protein.	annotation not available	0.904
CCH79_00014617	CCH79_00009987	ENSGAFP00000029916	ENSGAFP00000022427	Uncharacterized protein.	Uncharacterized protein.	0.954
CCH79_00014617	CCH79_00010466	ENSGAFP00000029916	ENSGAFP00000001577	Uncharacterized protein.	Uncharacterized protein.	0.989
CCH79_00014617	CCH79_00015086	ENSGAFP00000029916	ENSGAFP00000017295	Uncharacterized protein.	PB1 domain-containing protein.	0.817
CCH79_00014617	CCH79_00015379	ENSGAFP00000029916	ENSGAFP00000001749	Uncharacterized protein.	Uncharacterized protein.	0.681
CCH79_00014617	CCH79_00016030	ENSGAFP00000029916	ENSGAFP00000029170	Uncharacterized protein.	Uncharacterized protein.	0.916