Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH79_00010472RRM domain-containing protein. (541 aa)    
Predicted Functional Partners:
ENSGAFP00000031965
NOP56 ribonucleoprotein homolog.
   
    0.921
CCH79_00016776
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.919
CCH79_00009068
Uncharacterized protein.
   
    0.918
ENSGAFP00000026183
Small integral membrane protein 12.
  
    0.918
ENSGAFP00000011927
annotation not available
   
    0.821
NIPSNAP2
NIPSNAP domain-containing protein.
   
    0.817
CCH79_00013303
NIPSNAP domain-containing protein.
   
    0.817
CCH79_00003795
NIPSNAP domain-containing protein.
   
    0.817
CCH79_00008124
Uncharacterized protein.
   
    0.815
CCH79_00014286
Uncharacterized protein.
   
    0.815
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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