STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00012233Uncharacterized protein. (246 aa)    
Predicted Functional Partners:
CCH79_00009710
Uncharacterized protein.
   
 0.978
CCH79_00009354
Uncharacterized protein.
    
 0.953
CCH79_00020008
Uncharacterized protein.
  
  
 
0.952
ENSGAFP00000028436
Peroxisomal biogenesis factor 14.
    
 0.923
CCH79_00015782
Pex2_Pex12 domain-containing protein.
   
 0.901
CCH79_00019032
Uncharacterized protein.
   
 0.877
CCH79_00012341
DUF4097 domain-containing protein.
    
 0.858
CCH79_00018907
Peroxisomal membrane protein PEX16.
   
 
 0.813
ENSGAFP00000021460
Wu:fe02h09.
     
 0.784
CCH79_00004295
RING-type domain-containing protein.
   
 0.782
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.